Protein Info for RALBFv3_RS18080 in Ralstonia solanacearum IBSBF1503

Annotation: cytochrome ubiquinol oxidase subunit I

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 496 transmembrane" amino acids 32 to 56 (25 residues), see Phobius details amino acids 74 to 95 (22 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 202 to 225 (24 residues), see Phobius details amino acids 237 to 255 (19 residues), see Phobius details amino acids 337 to 362 (26 residues), see Phobius details amino acids 374 to 394 (21 residues), see Phobius details amino acids 428 to 447 (20 residues), see Phobius details PF01654: Cyt_bd_oxida_I" amino acids 27 to 454 (428 residues), 527.3 bits, see alignment E=1.1e-162

Best Hits

KEGG orthology group: K00425, cytochrome bd-I oxidase subunit I [EC: 1.10.3.-] (inferred from 96% identity to rsl:RPSI07_mp1237)

MetaCyc: 54% identical to cyanide insensitive ubiquinol oxidase subunit I (Pseudomonas putida KT2440)
RXN-6883 [EC: 1.10.3.11]

Predicted SEED Role

"putative Cytochrome bd2, subunit I" in subsystem Terminal cytochrome d ubiquinol oxidases or Terminal cytochrome oxidases

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.10.3.-

Use Curated BLAST to search for 1.10.3.- or 1.10.3.11

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (496 amino acids)

>RALBFv3_RS18080 cytochrome ubiquinol oxidase subunit I (Ralstonia solanacearum IBSBF1503)
MPAATGPRDCKRLASLEVAVTFDALLLSRVQFAWVVALHILLPAFTVGLSCFVATLEVRW
WITNDDVFRRLSTFWTKIFAVSFGMGVVSGIVMPFQFGTNWSRFSDAASNVIGSLMGYEV
ITAFFLEAGFLGVLLFGRKLVPQWAHVLAAVMVALGTVLSSFWILAVNSWMQTPVGFEVV
DGRYFPTDLLAVIFSPSFPYRLVHTVTAFVVTTGFVVLAVGAYYLRRQRFVDESRIMVRM
ALFFLAVMVPLQIVVGDLHGLNTLEHQPAKLAAMEGLWETRTHVPASLFAIPDAQAEANR
YEIAIPELGSLYLTHTWGGEVKGLKDFPREDRPPVSIVYFAFRIMVGVAMLMLALVVWGL
VLHRRGRLFQADTYLHAATWGAPLGFIAVLAGWTTTEVGRQPWMIYGHLRTAQGVTPSLT
AADVGLSLAGYMLCYLVIFGGGLTILLRLARGGPGGHNVEEPEFTAHERPARPLSAAGES
DEPGHPPHPRGGADAA