Protein Info for RALBFv3_RS18015 in Ralstonia solanacearum IBSBF1503

Annotation: filamentous hemagglutinin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3177 PF13018: ESPR" amino acids 1 to 47 (47 residues), 40.3 bits, see alignment (E = 9e-14) PF05860: TPS" amino acids 76 to 331 (256 residues), 162.3 bits, see alignment E=5.4e-51 TIGR01901: filamentous hemagglutinin family N-terminal domain" amino acids 107 to 202 (96 residues), 75 bits, see alignment (E = 3.4e-25) PF05594: Fil_haemagg" amino acids 258 to 354 (97 residues), 10.6 bits, see alignment (E = 0.0002) amino acids 457 to 526 (70 residues), 5.8 bits, see alignment (E = 0.0065) amino acids 510 to 568 (59 residues), 13.3 bits, see alignment (E = 2.7e-05) amino acids 576 to 628 (53 residues), 18 bits, see alignment (E = 9.9e-07) amino acids 613 to 677 (65 residues), 10.9 bits, see alignment (E = 0.00016) amino acids 686 to 747 (62 residues), 6.8 bits, see alignment (E = 0.0031) amino acids 721 to 796 (76 residues), 18.7 bits, see alignment (E = 5.7e-07) amino acids 791 to 838 (48 residues), 5.6 bits, see alignment (E = 0.0073) amino acids 843 to 906 (64 residues), 17.9 bits, see alignment (E = 1.1e-06) amino acids 1005 to 1048 (44 residues), 5.9 bits, see alignment (E = 0.006) amino acids 1108 to 1168 (61 residues), 19.1 bits, see alignment (E = 4.5e-07) amino acids 1761 to 1826 (66 residues), 5.9 bits, see alignment (E = 0.006) amino acids 1860 to 1912 (53 residues), 10.9 bits, see alignment (E = 0.00016) amino acids 1919 to 1981 (63 residues), 12.3 bits, see alignment (E = 5.8e-05) TIGR01731: adhesin HecA family 20-residue repeat (two copies)" amino acids 468 to 505 (38 residues), 16.8 bits, see alignment (E = 5.2e-07) amino acids 506 to 546 (41 residues), 22.5 bits, see alignment (E = 8.5e-09) amino acids 556 to 590 (35 residues), 14.8 bits, see alignment (E = 2.3e-06) amino acids 590 to 628 (39 residues), 15.8 bits, see alignment (E = 1.1e-06) amino acids 631 to 669 (39 residues), 20.3 bits, see alignment (E = 4.2e-08) amino acids 654 to 692 (39 residues), 11.3 bits, see alignment (E = 2.8e-05) amino acids 719 to 755 (37 residues), 19.7 bits, see alignment (E = 6.5e-08) amino acids 756 to 796 (41 residues), 28.2 bits, see alignment (E = 1.4e-10) amino acids 797 to 839 (43 residues), 11.6 bits, see alignment (E = 2.3e-05) amino acids 823 to 853 (31 residues), 6.9 bits, see alignment (E = 0.00069) amino acids 841 to 885 (45 residues), 12.3 bits, see alignment (E = 1.4e-05) amino acids 886 to 914 (29 residues), 9 bits, see alignment (E = 0.00015) amino acids 958 to 978 (21 residues), 8.5 bits, see alignment (E = 0.00021) amino acids 980 to 1015 (36 residues), 10.9 bits, see alignment (E = 3.7e-05) amino acids 1023 to 1066 (44 residues), 18.9 bits, see alignment (E = 1.2e-07) amino acids 1051 to 1083 (33 residues), 8.3 bits, see alignment (E = 0.00026) amino acids 1110 to 1147 (38 residues), 17.8 bits, see alignment (E = 2.6e-07) amino acids 1128 to 1168 (41 residues), 12.7 bits, see alignment (E = 1.1e-05) amino acids 1257 to 1280 (24 residues), 7.1 bits, see alignment (E = 0.0006) amino acids 1437 to 1470 (34 residues), 10.1 bits, see alignment (E = 7e-05) amino acids 1534 to 1552 (19 residues), 6.2 bits, see alignment (E = 0.0011) amino acids 1767 to 1787 (21 residues), 8.6 bits, see alignment (E = 0.00019) amino acids 1787 to 1828 (42 residues), 6.5 bits, see alignment (E = 0.00089) PF13332: Fil_haemagg_2" amino acids 1927 to 1993 (67 residues), 44.7 bits, see alignment (E = 4.2e-15) amino acids 2009 to 2163 (155 residues), 22.7 bits, see alignment 2.4e-08 amino acids 2182 to 2264 (83 residues), 27.8 bits, see alignment (E = 6.6e-10) amino acids 2326 to 2498 (173 residues), 147.1 bits, see alignment 1.4e-46 PF14412: AHH" amino acids 3072 to 3163 (92 residues), 46.8 bits, see alignment (E = 7e-16)

Best Hits

Predicted SEED Role

"Putative large exoprotein involved in heme utilization or adhesion of ShlA/HecA/FhaA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (3177 amino acids)

>RALBFv3_RS18015 filamentous hemagglutinin (Ralstonia solanacearum IBSBF1503)
MNAKCYRTVFNAVRGMLVAVEESARSTGKGRQTGGQAGSPVAASASTAARFAVLPVVFGA
WCALGLSYTVHAQVVAAPGSGAQVIQTQNGLQQVNVARPNGSGVSLNTYTQFNVPGQGTI
LNNAPGITQTQQAGYINGNPNLLPGGSARIIVNQVTSTQPSTLRGYLEVAGPRAEVVIAN
PNGILVNGGGFINTSRATLTTGVPVFGGSGSLDAYRVTGGQITVQGAGLNASNVDQVDLI
ARAVSVNASVYANQLNVVAGANQVDHGTLNATPIAGDGAAPANGIDVSQLGGMYANKILL
ASTEKGVGVSLRGVVAAQAGDLTLTAQGKLVLAGQTNASGNLSVSAQGGIDNTGTTYGRQ
SAALGTSGDLTNSGTLAAQQNLRVNANNVASSGTLGAGANSDGSLAHAGDLSVVAGGALS
ATGQNVAGGNATLQGASVNLAGSQTSANGNLNLNAQAGNLDLTGATTSAGGALSANAQGA
LINDRGHLSSQGATAVTTGSLSNQGGQMVSQNALSANIAGALSNQGGTLQAAGALNASAG
SLDNTAGHIASLNTDGLNLTTAGRLTNAQGGTIGGNGNVAVQAGQLNNTGTISAVQNLGV
SAAQTLANAGTLAANGNTTVSAGTTLTNVGGTIAAGQRANVSAATLDNSAGTLTGNQLAL
AAATLVNRGGTITQTGTGPIAIGVSGTLDNTGGAIRTNSADLALAPATLINDHGTITDSG
TGTLSVTAGSLSNNGGTIATNGALDVQAGAVSNQGGKLSAQSQATLNVASLDNSAGGFVG
AQSVGITDQGGLDNAGGTVAASGALTVSAGFIANAGGAIKNAGTQATSVSASQGLDNTQS
GLIGGNGEVSVSVSSSGGSVDNSGGTVVAGGNAVVQSGGTLRNAAGRVQAKGSAAVTAAG
AITNTGGQIEADGAAATLQVTGASLDNTNGRIANAGSGATTVGAASITNANTGGVAGAGT
IGGNGDVTVSGQTLSNTQGGQIVAGHDLTLGTTRSVNNGGGTLSAANNVTVNAAGAAVVN
QGGSIRGNGAVSFNVASLDNTAGKIGNDTGSGGSVAMTTGSLANQGGAIGSDRNLSVTTG
QLSGDGRIIAGGDGAITINGNYTHSAANQIQANHNLTFTTTGALTNQGTLAAVNALTVNA
ASIDNRAGADLNSASTSVNAGGAITNAGRIEGDTVSTQSASLANTGTVIGNNVTLNARGI
SNTGASAALAAATQLNLYASDGLSNTGGATIFSLGDINIAANAVRDGNGLLANRSNLVTN
DQSTIEAQGNLEIATQTLNNVRPAPNVQTVTTGSTTTHETKRGKYIACATMNAAPHGGCT
QAVWNSGYKTPIDATFSASQIVSQSSGPNPVDNVLVVNVNGQNQAIYYNTLTRNGDGSVS
VNYWDAYDPHTNYVPSTEYATRSDGHNGYQRVEIARDTTTVTQQDQVSGGSAPQARLLSG
RNMTLANVGTINNNYSAIAAGGSIRIGSSQQGGAVGSGNYGGTTVNNVGRTLYQYQTQNI
VSTYAWNEGTNQDVGAVAQAPAVLPPVAIGGTGGTLIANNAVQINATNLNNTNVAAASSS
TGATGGTLGANQSAAGVAASGQQTVGAASAQQPAVNAPQSVAGSNGALNISLPTSGLFSL
RTAPGQPYLIATDPRLTSYTKFISSDYMLSALNLNPQLVQKRLGDGFYEEKLVRDQITQL
TGRVYLQGYGNNEDQYRALMGSGVNAAKQFGLVPGIALTAAQMDALTSDIVWLVNQTVTL
PDGSTQQVLAPVVYLAHTHANDLQPTGALIAADDVQIHAVGSATNSGVIKGGTQTVITAT
DIINRGGTIASDKTRGTTVVSASHDILNASGEISGNRVAAQAGHDIVNTTLVDTVGATAV
AGNSKASVSLVGRQGSIASTGDLLVRAGNDLTVHGANLTAGGNAQVTAGHDIVVDAVQSV
GSQSVTQNSQHHWEADSTTHQGSTISAGGSLAMQSGNDTTFKGAKVSAGQDLSVIAGGNL
TATTVTDTSRYNNVAADSRTRQEVDRTYDETAVGTAFSSGRHATLAAVSAAAGGNARTDG
KGNVTLTGSSITAGTNTATPGAITIAGNGNVTLNEGREEHDSYQAVSSKRGSLVSGSTTG
TMQSTQANLGVASTVSGDSVVVRAGKDLTVQGSNVVGTNDVTLGAARNVRITTSQDTVQT
ASSYEKTDSGLLTNGGLSLSIGTRSQSNQQQSTQVTNTGSMVGSLNGNLTITAGSDAHIT
GSTIHAGNDLNVAGKTVTIDSAYDTASQSEQQRFRQAGVTVAITNPVVSAIQTGQQMASA
AKHVDGDPRLLALAAATTGLAAKNLYDSVGGDPVKAATSVGISISVGASRNDSQSQMKSS
TAVGSTVSAGRNVAIAAAGAGKGSDINVVGSTVSSGKSTLLTAEGDVNLQAAQSASSQHS
TNSGASAALGVSISGGSQTGIALTASVSGSRGHADGDSTTWTNTHVSAGNTLTIQSGGDT
NLKGAVASGQQVVANVGGNLNVESLQNTDHYDSKQQSAGVSVSVCVPPLCIGKSSVAGSF
SQNKLNNDYAGVMEQSGIKAGDGGFQVGVKGNTDLKGGVIASSDKAVQEGLNSLTTATLT
HSDIQNHANYSGSQVGISGGYSFGGGGSTDKSGIGKDQQGKADNVNPVPGTEQASHGGFV
ATPPVVLSASGSASSTTRSAISGGVITITDSTKQQQLTGQTAAETVAGINRNTSNTGGAL
APIFDKDKIQAGFEIASQFINQVGTFVSTRVQEADAERKDADRLEKQAADPDAPLTEAQR
QQLWEQAQQARADAIDVESKWGAGGTYRQVANALVAAAGGNVTGSTAQFMQNAVVNYVQQ
QGAEYIGKLVADGVVKEGSPEHAGLHVIVACAGAAASSQNCGAGALGAAASSLLTNLFTD
DPNETNAGKDAKRNIVTSLVAGVAALVSPDNAATATTAAVAAADNNWLTPKQRIERDQKL
ANCTTDACRKLVKDQYAKLWQANHDRAEKCHSANACLAVADELRGVMRESGQRMGELQAK
LKDSGSLTTDEMAELYALQRGAESLHGMESLALHNAVKYGGPEVLQSRQATNVIGDVLID
AASSLGLAGLRQLHHICTDKNCVSTNNGGPWTPKFAKLFDGADMSLQDQANKVLVDGHVG
PHPQEYHDTVYRRLGEAVADLPPKTPQYQQALRDELARISNEIKTPGTLLNKLVTKQ