Protein Info for RALBFv3_RS17835 in Ralstonia solanacearum IBSBF1503

Annotation: cytochrome bd ubiquinol oxidase subunit II

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 65 to 83 (19 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details amino acids 153 to 178 (26 residues), see Phobius details amino acids 198 to 217 (20 residues), see Phobius details amino acids 227 to 249 (23 residues), see Phobius details amino acids 265 to 288 (24 residues), see Phobius details amino acids 308 to 330 (23 residues), see Phobius details PF02322: Cyt_bd_oxida_II" amino acids 14 to 333 (320 residues), 282.2 bits, see alignment E=2.9e-88

Best Hits

KEGG orthology group: K00426, cytochrome bd-I oxidase subunit II [EC: 1.10.3.-] (inferred from 96% identity to rso:RS03187)

Predicted SEED Role

"Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)" in subsystem Bacterial RNA-metabolizing Zn-dependent hydrolases or Conserved gene cluster associated with Met-tRNA formyltransferase or Terminal cytochrome d ubiquinol oxidases or Terminal cytochrome oxidases (EC 1.10.3.-)

Isozymes

Compare fitness of predicted isozymes for: 1.10.3.-

Use Curated BLAST to search for 1.10.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (343 amino acids)

>RALBFv3_RS17835 cytochrome bd ubiquinol oxidase subunit II (Ralstonia solanacearum IBSBF1503)
MNAIPDLTQPAGWLPVVFMALMGIAVLAYVVLDGYDLGVGILLRRADDAEKDTMIASIGP
FWDANETWLVLGVGLLLVAFPAAHGEILGALYLPVALMLFGLILRGVAFDFRVKARAHHK
PWWNHAFYAGSVAATVSQGVMLGLYITGFHYTAANIVFAFCTAAGLTAGYVLLGATWLIM
KTEGALQLRAVQWARGSLWLTALGVAAVSLATPWVSARVFDKWFALPNLILLAPVPLVTV
ALFGLIDWVLRRLPQQIGKGDEHLVWAPFAGTAAIFLLAFNGLAYSLFPYLVVDRLDIWQ
AASAPESLQFMLVGVVIVLPTIVAYTIYAYKVFHGKATALRYY