Protein Info for RALBFv3_RS17670 in Ralstonia solanacearum IBSBF1503

Annotation: pilus assembly protein PilY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1111 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF05567: Neisseria_PilC" amino acids 519 to 906 (388 residues), 130.3 bits, see alignment E=4.9e-42

Best Hits

KEGG orthology group: K02674, type IV pilus assembly protein PilY1 (inferred from 94% identity to rsl:RPSI07_mp1320)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1111 amino acids)

>RALBFv3_RS17670 pilus assembly protein PilY (Ralstonia solanacearum IBSBF1503)
MMNKKHWTLLLATAAALPGVSRAQLVISDTLTGAASSYDWKALNGACLTAGNNTGSIPAC
SGLSYYSGKTLVGGATGTLPDAVGSGALRLTNGDTSSSGSNGTYQSGAVVSNFTFPSSQG
LQVTFTTVTYGGNNYNNTGADGISFFLADGSKSATVGALGGSLGYSCSNVNSTYDGVQGG
YIGLGIDEFGNFSNSSDNTSSGAGFKASRISLRGSGNTNWANLNSAYSSYYPSSLSASQQ
ATAVKKTCSTGYLYDFSRGTSNPTKQSALTYNYNYITGDDLSFTLANQEAVSKPLRGSAV
PITYGLTITQDGLLSLSYSVNGGTAQPVITNQSITSSNGALPSTFRFGFSAGTGGGSNVH
EITCFKAAPVEQSSSSAGANVQQSARVEAGTQLYLAYYHPTNWWGELTAQSLVVDSTTGT
VSIASTANWDASCTLTGGSCQAMGSSATVTATSPSARQILTWNGSTGIPFEWNSLTSTQQ
SSLTTGDSSVTTNRLLYLRGDRTKEASSSGPYRTRTGVLGDIINSSPTWVGKPSSPYNGP
WVDSLNSSASPAEPTGSYATFKTTYATRQNVVYVGANDGMVHGFRAGAYDTSGNFVSNTT
TPNDGVETLAYVPGAVLSMIHSTTGKVDFSSPSYSHNLYVDATPGTGDLYYNGAWHTWLV
GGLGGGGNASGTIADSTTSTGGTLYALDITDPTQFSESNAGSLVIGEWSSSGLTCVNVTN
CGNYLGDTYGTPVIRRLHNGMWAVLFGNGYNSQNGTAGLFVMLVNPSTGAKTFYYFDTGY
GTSKDPTGNGGKNGIAYVTPADLDGDHITDYVYAGDLFGNVWRFDLTAATPSSWAAASAP
LFSTTAGQPISSKVVVASVPDTAGGNPRVVVAFGTGQNLPATLTSATKYATSSQALYGVW
DWNMSAWNAKAAATSQYTSLTAPQTVTVSSLQTQTITSQSTASGSTASYRTVSTNKVCWQ
GSSVCSTGNNKYGWTLVLPSTTSGSTTNYEQVIYNPTLAYGMFVVNTTIPAVTQILSCTT
TQASGYTMAIAIGTGGAGTSSFFGDSNGSFSTYNGGIVSGVGLSGTGTPSFVTTDSGVTM
VQQTSDGKGSATAVNPGASATGSRVNWVKLR