Protein Info for RALBFv3_RS17275 in Ralstonia solanacearum IBSBF1503

Annotation: AcrB/AcrD/AcrF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1034 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 332 to 351 (20 residues), see Phobius details amino acids 358 to 379 (22 residues), see Phobius details amino acids 385 to 405 (21 residues), see Phobius details amino acids 429 to 450 (22 residues), see Phobius details amino acids 458 to 479 (22 residues), see Phobius details amino acids 519 to 540 (22 residues), see Phobius details amino acids 846 to 867 (22 residues), see Phobius details amino acids 874 to 894 (21 residues), see Phobius details amino acids 902 to 926 (25 residues), see Phobius details amino acids 947 to 966 (20 residues), see Phobius details amino acids 978 to 1004 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1004 (1001 residues), 727.9 bits, see alignment E=9.2e-223

Best Hits

KEGG orthology group: None (inferred from 97% identity to rso:RS03086)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1034 amino acids)

>RALBFv3_RS17275 AcrB/AcrD/AcrF family protein (Ralstonia solanacearum IBSBF1503)
MNISSWSIRNPVPAVLCFILLTLFGLIGFHKLQVQDFPDMDLPTISISASLEGAAPSQLE
NEVARKIEDKLTSLSKLDHITTKITDGAVSISVSFKLEKDPQTALSEVRNAVDGARASLP
SEMAAPTVSKSDAANSALLTYTASSATLDEQDLSWFVDNDLAKALLSVKGVSKVERIGGI
DREVHVDLNPALMAGLGLTAETVSSQLTAMQRERSGGQGDIGGQRQSARTLIGVGSAADV
AALTLATGDGRRVRLDQIARVTDGAADRASYAYLDGKPVVGVQITRAKGNSDVTVLHDVR
NAIATFAGAHPEVRLVEASNTVSPIEDNYEGSMSMLIEGALLAIAVVWWFLRDGRATLVS
AAALPLSIIPTFGVIYLAGYSLNTITLLALSLVVGILVDDAIVEIENIERHLRMGKTPYQ
AAMEAADEIGLAVIATTFALVAVFLPTAFMSGIPGLIFRQFGVTASVAVLMSLLVARLLT
PMMAAYLMKATRHAEHDSPLMTRYLRWVGGGLDKRGRTMLAAGLMLLLSLAMAAALKTGF
FPAQDKAQTQVTLELTPGSTLQQSRAVALRAEALIRRLPEVKGVFSTVGSASDSGNPAAG
ASSTADVRTSTLVVDLVARGERKSKQSAVEEAIRHQLRDLPGVRVAVNNGGNGEKLQITL
AGSDATALESAAAALESQLRTLHGIGNVTSSAALQRPEVQFRPDPARAAALGVTTEAAAD
AIRIGTYGAYSTALPKLNLPERQIAIRARIDPALRQDLDAIGQLRVAGTNGSVTVASVGT
LSIGSGPSQIDRLDRARNITLSVELNGRTIGEVNQEAQQLPALQHLPAGVHQVQQGELQN
MSELFQSFGLAMAIGVFCVYAVLVLLFHDFLQPATILCALPLSLGGALLSLLITRMSFSM
PALIGLLMLMGIVTKNSILLVEYAIMARREHGLSRLAALMDACHKRARPIVMTTIAMGAG
MLPNALGLGAEPSFRQPMAIVVIGGLLASTLLSLLVIPVVFTYVDDLEQWLRRQFRQART
HHDPSLQLPVPHDQ