Protein Info for RALBFv3_RS16580 in Ralstonia solanacearum IBSBF1503

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 211 to 230 (20 residues), see Phobius details amino acids 242 to 265 (24 residues), see Phobius details amino acids 272 to 289 (18 residues), see Phobius details amino acids 299 to 320 (22 residues), see Phobius details amino acids 331 to 356 (26 residues), see Phobius details amino acids 366 to 383 (18 residues), see Phobius details amino acids 400 to 417 (18 residues), see Phobius details PF13795: HupE_UreJ_2" amino acids 197 to 357 (161 residues), 129.3 bits, see alignment E=5.2e-42

Best Hits

KEGG orthology group: None (inferred from 88% identity to rsl:RPSI07_mp1624)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (431 amino acids)

>RALBFv3_RS16580 membrane protein (Ralstonia solanacearum IBSBF1503)
MASASAEAVLRCLRAAWIGVLGVLWAVSAMAHPMPESRVWIDTTPAGLRLTLQLPLNRLE
YGFGQPLADFPGTVLARHGEALSRYLLQHVGARGGGQDWQASRPQLTVVGADASAELEAV
IDLRAPDGAARRAPTLLYDAITHEVRTHRVLVFLRNDWAGGFASGPPLLLGELNHGHTSL
LIPLEPAQPGASVLRLLREGILHIAEGTDHLLFLLMLLVVAPLVAGSHRWNQVRPVRQAL
RHTALVVTAFTAGHTITLVLGSMGLLTVPTQSVEVAVAVTIAIAAWHAWRPLFAHAEAWM
ALIFGLIHGMAFSASLSGAGLTPWQHAQALLAFNLGIEAMQLAAVVVVMPPLLVLVRTQP
ARYATLRRCLSAIVGALALAWIIERLNLASLGALSSIADGWPVLALIPGLLWLAALASGG
QRRFRVAASED