Protein Info for RALBFv3_RS16100 in Ralstonia solanacearum IBSBF1503

Annotation: PTS lactose transporter subunit IIC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 729 transmembrane" amino acids 31 to 50 (20 residues), see Phobius details amino acids 74 to 95 (22 residues), see Phobius details amino acids 107 to 126 (20 residues), see Phobius details amino acids 134 to 158 (25 residues), see Phobius details amino acids 178 to 199 (22 residues), see Phobius details amino acids 204 to 222 (19 residues), see Phobius details amino acids 230 to 249 (20 residues), see Phobius details amino acids 287 to 309 (23 residues), see Phobius details amino acids 321 to 341 (21 residues), see Phobius details amino acids 347 to 370 (24 residues), see Phobius details amino acids 378 to 417 (40 residues), see Phobius details amino acids 702 to 712 (11 residues), see Phobius details PF02378: PTS_EIIC" amino acids 30 to 355 (326 residues), 70.1 bits, see alignment E=1.9e-23 PF00563: EAL" amino acids 467 to 701 (235 residues), 227.5 bits, see alignment E=1.6e-71

Best Hits

KEGG orthology group: None (inferred from 80% identity to rsl:RPSI07_1818)

Predicted SEED Role

"PTS system, cellobiose-specific IIC component (EC 2.7.1.69)" in subsystem Beta-Glucoside Metabolism (EC 2.7.1.69)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.69

Use Curated BLAST to search for 2.7.1.69

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (729 amino acids)

>RALBFv3_RS16100 PTS lactose transporter subunit IIC (Ralstonia solanacearum IBSBF1503)
MTTQAPSPWLGFLTIVERVDREPYFVAIRRGLALSLPLIMIGALALLLRYPPTAGIRRLL
LGAFGPQLDFFCDSLLAGTFGIGALVALYGFADVLTNLHNQRAGHRVVNPTVAAVVVASC
FFTLIAPSGDEAVIASLSLSHGLFGALMVASLGGSLFLKLCGIRWLRIPSNHLNNDPLVG
DVLSVTPAGMLTILAFAMFKAALAWVGWSNVMGALAALLAVPSSSGSNSLLFGIGYETAA
QVLWLLGIHGPSALYTVQQHVLEPATSANVAAVASGAAPQFIFTYDFFAAFARMGGSGGT
LSLVLALLLSSSTVRGRKMALFALLPALFNVNEPLLFGLPLVLNPVYAIPFVVAPVTQIL
VAYGAIIAGLMPKTGYSVAWTTPALFSGYAVTGSFAATVVQLLALAAGTMIYVPFVRMAE
TLSRRRSQAVLASLQQMTESPEAGLKAKRCLDLPGDEGRMALALASDLEYAIHAEEQIFL
EFQPQVDSQTGRVFGAEALLRWQHPVLGRVAPPIVVTLADDIDLIDRLGLHTLSLACHQR
SLWRDSVPEDFVIAVNLSPRQLQDREFHRKVIDILHREQLPPSMIELEITESTMLLPDVH
AIDNLKRLREAGVKVALDDFGMGHTSLHYLRELPLDTVKIDRSLADVSAGSVNEHIVRSI
VNLSRTLNLSTVVEGIENAQQLKRLSALGCDRFQGYFFSRPLAANVCLAFVLEAHLFKSI
WQVQPISEA