Protein Info for RALBFv3_RS15655 in Ralstonia solanacearum IBSBF1503

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 54 to 75 (22 residues), see Phobius details amino acids 87 to 107 (21 residues), see Phobius details amino acids 119 to 138 (20 residues), see Phobius details amino acids 151 to 173 (23 residues), see Phobius details amino acids 180 to 204 (25 residues), see Phobius details amino acids 216 to 235 (20 residues), see Phobius details PF13386: DsbD_2" amino acids 9 to 227 (219 residues), 152.2 bits, see alignment E=9e-49

Best Hits

KEGG orthology group: K09792, hypothetical protein (inferred from 97% identity to rsc:RCFBP_20143)

Predicted SEED Role

"Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (248 amino acids)

>RALBFv3_RS15655 membrane protein (Ralstonia solanacearum IBSBF1503)
MSAAALLSVFLIALLGGVHCLAMCSGIALAAERAQPSVRIVSRRRLGCEQMVMHLGRLTT
YTLLGAAMGALGATVWRQQWLPIQRGLFALASTLLLVYGLLLLSRTAADAWRVAGLERVL
GRLSAGLGAIVSRSGAMSLRTRSPLAGRYLTGLAWGLVPCGMVYGALAVALLAGNASSGA
VVMLVFGAGTLPNLLMMSGLAGWLRGVSRMRWARGIAGAGIAAFGIWGLVCAAWLPEMLN
AHGFCLVL