Protein Info for RALBFv3_RS14200 in Ralstonia solanacearum IBSBF1503

Annotation: ferredoxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 TIGR01944: electron transport complex, RnfABCDGE type, B subunit" amino acids 6 to 157 (152 residues), 230.5 bits, see alignment E=6.1e-73 PF04060: FeS" amino acids 16 to 48 (33 residues), 51.9 bits, see alignment 1.7e-17 PF14697: Fer4_21" amino acids 83 to 137 (55 residues), 64.7 bits, see alignment E=2.3e-21 PF13237: Fer4_10" amino acids 84 to 131 (48 residues), 29.7 bits, see alignment 1.9e-10 PF00037: Fer4" amino acids 84 to 105 (22 residues), 33 bits, see alignment (E = 1.3e-11) PF13187: Fer4_9" amino acids 89 to 135 (47 residues), 27.8 bits, see alignment 7.3e-10

Best Hits

KEGG orthology group: K03616, electron transport complex protein RnfB (inferred from 97% identity to rsc:RCFBP_20473)

Predicted SEED Role

"Iron-sulfur cluster-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (268 amino acids)

>RALBFv3_RS14200 ferredoxin (Ralstonia solanacearum IBSBF1503)
MVSLAPSLADRLEDLLPQTQCTKCGYHGCRPYAEAMARGEALPNRCPPGGAEGIRRLSEA
LGRTGPPLALNPEHGVEQSRALAVIDPEHCIGCTLCIQACPVDAIVGAPKAMHVVLADWC
TGCDLCVAPCPVDCIDMVPVTGERTGWDAWSQAQADVARDRYVFHNDRLAREKAENEARL
AAKAAAKLAAVSAEQPADDAERAAQARKQAIIQAAIERARQKQAEMAARGQGPRNVTDVP
AEVQAQIDEAEARRKRIADLGQPPSDKP