Protein Info for RALBFv3_RS13105 in Ralstonia solanacearum IBSBF1503
Annotation: catalase/peroxidase HPI
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 83% identical to KATG2_CUPNJ: Catalase-peroxidase 2 (katG2) from Cupriavidus necator (strain JMP 134 / LMG 1197)
KEGG orthology group: K03782, catalase/peroxidase [EC: 1.11.1.6 1.11.1.7] (inferred from 84% identity to bml:BMA10229_A1169)MetaCyc: 67% identical to catalase-peroxidase KatG monomer (Mycobacterium tuberculosis H37Rv)
Catalase. [EC: 1.11.1.21, 1.11.1.6]; 1.11.1.21 [EC: 1.11.1.21, 1.11.1.6]; RXN-18721 [EC: 1.11.1.21, 1.11.1.6]
Predicted SEED Role
"Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)" in subsystem Oxidative stress or Photorespiration (oxidative C2 cycle) or Auxin degradation (EC 1.11.1.6, EC 1.11.1.7)
MetaCyc Pathways
- reactive oxygen species degradation (4/4 steps found)
- ethanol degradation IV (3/3 steps found)
- isoniazid activation (2/2 steps found)
- superoxide radicals degradation (2/2 steps found)
- betanidin degradation (1/1 steps found)
- baicalein degradation (hydrogen peroxide detoxification) (1/2 steps found)
- methanol oxidation to formaldehyde IV (1/2 steps found)
- luteolin triglucuronide degradation (1/4 steps found)
- xanthommatin biosynthesis (1/4 steps found)
- sesamin biosynthesis (1/8 steps found)
- justicidin B biosynthesis (1/10 steps found)
- matairesinol biosynthesis (1/10 steps found)
KEGG Metabolic Maps
- Biosynthesis of phenylpropanoids
- Methane metabolism
- Phenylalanine metabolism
- Phenylpropanoid biosynthesis
- Tryptophan metabolism
Isozymes
Compare fitness of predicted isozymes for: 1.11.1.6
Use Curated BLAST to search for 1.11.1.21 or 1.11.1.6 or 1.11.1.7
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (724 amino acids)
>RALBFv3_RS13105 catalase/peroxidase HPI (Ralstonia solanacearum IBSBF1503) MTTEAKCPFKHAATGGVSNRDWWPNQLNLKILHQHSSLSDPMDKDFNYAQAFKRLDLAAV KQDLLALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRTGDGRGGAGAGQQRFAPLNSWP DNANLDKARRLLWPIKQKYGRNISWADLMILAGNVALESMGFKTFGFAGGRKDVWEPEED VYWGSETTWLGDQRYTGERDLENPLAAVQMGLIYVNPEGPNGNPDPIAAARDIRETFARM AMDDEETVALIAGGHTFGKTHGAGPASHVGPEPEATGLDEQGLGWKSSFGSGKGGDAITS GLEVTWTTTPTQWSNNFFENLFGYEWELTKSPAGAHQWVAKGAGATIPDAHDPSGKHLPT MLTTDLSLRFDPAYEKISRRFYEHPDQFADAFARAWFKLTHRDMGPRARYLGPEVPAEAL IWQDPIPAVDHKLIDAQDIAALKGKVIASGLSVSQLVSTAWASASTFRGSDMRGGANGAR IRLAPQKDWEVNQPAQLATVLETLKGIRAEFNRAQSGGKQVSLADLIVLAGCAGVEQAAK NAGHAVQVPFTPGRMDASQAQTDVTSFAVLEPIADGFRNYQKGRYTIPAEALLVDKAQLL TLTAPEMTALVGGMRVLGTNLGQTGHGVLTKRPGSLTNDFFVNLLDMGTEWKATSDAKDV FEGRDRATGELKWSGTRVDLVFGSNSQLRALAEVYGSADAQEKFVRDFVAVWNKVMNLDR FEHA