Protein Info for RALBFv3_RS12170 in Ralstonia solanacearum IBSBF1503

Annotation: EamA family transporter RarD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 transmembrane" amino acids 8 to 26 (19 residues), see Phobius details amino acids 38 to 59 (22 residues), see Phobius details amino acids 72 to 92 (21 residues), see Phobius details amino acids 103 to 120 (18 residues), see Phobius details amino acids 127 to 144 (18 residues), see Phobius details amino acids 150 to 166 (17 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 210 to 231 (22 residues), see Phobius details amino acids 239 to 260 (22 residues), see Phobius details amino acids 267 to 285 (19 residues), see Phobius details TIGR00688: protein RarD" amino acids 7 to 260 (254 residues), 232.8 bits, see alignment E=2.3e-73 PF00892: EamA" amino acids 7 to 143 (137 residues), 54.5 bits, see alignment E=7.3e-19 amino acids 152 to 282 (131 residues), 31.2 bits, see alignment E=1.1e-11

Best Hits

Swiss-Prot: 48% identical to Y485_PSEAE: Uncharacterized transporter PA0485 (PA0485) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K05786, chloramphenicol-sensitive protein RarD (inferred from 98% identity to rsc:RCFBP_20904)

Predicted SEED Role

"Protein rarD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (298 amino acids)

>RALBFv3_RS12170 EamA family transporter RarD (Ralstonia solanacearum IBSBF1503)
MSAHARRGVIFALLACTMWGLFPLYFKLLKSVTPLEILSHRVIWSLAVMVGVLAVKRHWA
WLWALRRAPRVVARHLASTAMLALNWCTYIWAVNHDHVIDASLGYFINPLVVVMLALLVL
GERLRPGQWLSVALAAAGVAWLTWQAGHLPWIALALAVTFGLYGLLRKTSPLGALEGLTL
ETLLLFPATLVYLGWLAAQQQNAFLGAPPGIRLLLVLAGPLTAVPLLLFGAGARRIPLSL
LGLLQYVSPTLQLLLGVWLYSEPFGGPKVFGYVLIWCGLAVYSAEGWMRLRRRGPAAA