Protein Info for RALBFv3_RS11815 in Ralstonia solanacearum IBSBF1503

Annotation: rRNA maturation RNAse YbeY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF02130: YbeY" amino acids 138 to 245 (108 residues), 105 bits, see alignment E=1.4e-34 TIGR00043: rRNA maturation RNase YbeY" amino acids 143 to 246 (104 residues), 112.5 bits, see alignment E=5.6e-37

Best Hits

KEGG orthology group: K07042, probable rRNA maturation factor (inferred from 97% identity to rsc:RCFBP_20949)

Predicted SEED Role

"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>RALBFv3_RS11815 rRNA maturation RNAse YbeY (Ralstonia solanacearum IBSBF1503)
MAKSKKTQPAAAARVDVFDAQGKPKTVDASALRIAFADGRSLLVSLPDTADGAITLVAEH
ADAATHAMLALRPEHHDSVTLRIDAEPAEPADDLDDEIADAEMLTLDLTVQHGDALKAAA
RKACPKQKDIEAWIAPALFADAQLNVRFVDEEEGRTLNRTYRGKDYATNVLTFSYAETEH
DPVSADVVLCCPVVEKEAKDQGKPLRAHYAHLIVHGALHAQGYDHENPAEAEEMEGIETA
VLAELGFPDPYADR