Protein Info for RALBFv3_RS11430 in Ralstonia solanacearum IBSBF1503

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 614 transmembrane" amino acids 48 to 69 (22 residues), see Phobius details amino acids 92 to 112 (21 residues), see Phobius details amino acids 167 to 189 (23 residues), see Phobius details amino acids 207 to 227 (21 residues), see Phobius details amino acids 292 to 312 (21 residues), see Phobius details amino acids 315 to 316 (2 residues), see Phobius details amino acids 325 to 332 (8 residues), see Phobius details PF06472: ABC_membrane_2" amino acids 41 to 316 (276 residues), 196 bits, see alignment E=1.3e-61 PF05992: SbmA_BacA" amino acids 45 to 365 (321 residues), 135.2 bits, see alignment E=5.7e-43 PF00005: ABC_tran" amino acids 413 to 546 (134 residues), 59.9 bits, see alignment E=6.9e-20

Best Hits

KEGG orthology group: K02471, putative ATP-binding cassette transporter (inferred from 96% identity to rsl:RPSI07_2913)

Predicted SEED Role

"ABC transporter, fused ATPase and inner membrane subunits (EC 3.6.3.27)" (EC 3.6.3.27)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.27

Use Curated BLAST to search for 3.6.3.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (614 amino acids)

>RALBFv3_RS11430 ABC transporter ATP-binding protein (Ralstonia solanacearum IBSBF1503)
MTTPRTAATPDSHKDSITELTVHHGRLNLSETWRLIKPYWFSEDRYKAWSLLALVVALSL
FVVYMNVLFTDWNRLFYNALEQKNYAEFWHQLGRFSWIAALIIVASVLRQYYTMMLRMRW
RTWITGSFLDDWLGKQAFYRLEQTHTADNPDQRIADDLRNFTDATLTLALGFLNSAVTLV
SFFSILWAVSGPLAFALGGHAFVIPGYMVWFALLYSVLGSIIIHFVGRPLIGLSFQRERY
EAYFRFLLVRVRENSESIALYRGEPTEKAILRGRFERIRANWSQFMDYTRRLNFASSGYA
QFAIIFPFLVSAPRYFGGTLTLGGMMQVATAFGQVQGAMSWFVDNYETLVSWKASTNRLI
EFQRAMRAAEREEERRAGIRDIEVDAAAVPAIEAHGLALNLPNRTPQDVLVEPFDMAIGR
GERVLVNGPSGCGKSTLVRAVAGIWPYGTGRIDIPDDARVLFLPQRSYLPAGTLADALCY
PDLPTEYSTERLAEVLVACRLPALVGLLDEVSNWSLRLSPGEQQRLAFARALLQRPDYLF
LDEATSALDEDTEANMYGLMLDAMPEVTLVSVAHRSTVARFHHRRLRYVPEGDPLTAVSY
RVVEEPEHMALAAS