Protein Info for RALBFv3_RS10350 in Ralstonia solanacearum IBSBF1503

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 PF14525: AraC_binding_2" amino acids 11 to 129 (119 residues), 31.5 bits, see alignment E=2.3e-11 PF00165: HTH_AraC" amino acids 155 to 192 (38 residues), 29.4 bits, see alignment 1e-10 PF12833: HTH_18" amino acids 168 to 246 (79 residues), 72 bits, see alignment E=6.2e-24

Best Hits

KEGG orthology group: None (inferred from 96% identity to rsc:RCFBP_21255)

Predicted SEED Role

"PROBABLE TRANSCRIPTION REGULATOR PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (248 amino acids)

>RALBFv3_RS10350 AraC family transcriptional regulator (Ralstonia solanacearum IBSBF1503)
MLDFRTYDLAAPPHAHDFVQVVMPSRGVLAMEVDGRAGCVDAHHAALIPAGATHAFEAAG
SNAFIVLDIATPVLETPDLGALADRVFFALTPGLRALAAWLHSAHAPHAGPVLDPALAQA
WSSLALATLAAHPANRSALYRVRLDPRAERAWRMIDQHYAQPLTVEALAAEVGLSARRLA
ALFRAAYGTTLHARLAEVRLGHALSLLERTTLPIAEIAARTGYYDQSALTRHLKAARGIT
PAAVRRGG