Protein Info for RALBFv3_RS09445 in Ralstonia solanacearum IBSBF1503

Annotation: multidrug efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1049 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 341 to 360 (20 residues), see Phobius details amino acids 367 to 387 (21 residues), see Phobius details amino acids 393 to 414 (22 residues), see Phobius details amino acids 437 to 460 (24 residues), see Phobius details amino acids 472 to 497 (26 residues), see Phobius details amino acids 539 to 559 (21 residues), see Phobius details amino acids 871 to 889 (19 residues), see Phobius details amino acids 896 to 917 (22 residues), see Phobius details amino acids 923 to 945 (23 residues), see Phobius details amino acids 970 to 991 (22 residues), see Phobius details amino acids 1003 to 1027 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 1 to 1026 (1026 residues), 1243.9 bits, see alignment E=0 TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 1 to 1036 (1036 residues), 1597.7 bits, see alignment E=0 PF03176: MMPL" amino acids 339 to 500 (162 residues), 33.5 bits, see alignment E=2.3e-12

Best Hits

Swiss-Prot: 57% identical to ACRF_ECOLI: Multidrug export protein AcrF (acrF) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 66% identity to adk:Alide2_0399)

MetaCyc: 56% identical to multidrug efflux pump RND permease AcrB (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-354; TRANS-RXN-355; TRANS-RXN-356; TRANS-RXN-357; TRANS-RXN-359; TRANS-RXN0-592

Predicted SEED Role

"RND efflux system, inner membrane transporter CmeB" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1049 amino acids)

>RALBFv3_RS09445 multidrug efflux RND transporter permease subunit (Ralstonia solanacearum IBSBF1503)
MAKFFIDRPVFAWVLALFIIVAGAISITQLPIAQYPTIAPPSILITATYPGASAKTLDDA
VTSIIEQEMNGADGLLYIESVSQAGNGQATITVTFKPGTDPALAQVDVQNRLKRVEARLP
SSVTQQGVQVDKTRSNFLLFATLISKDGKMDPVALGDYISRNVLNEIKRVPGVGQAVLFG
TERAMRIWVDPAKLVGYKLTPTDVYNAIRNQNALVSAGTLGDLPSTSDQPIAATVVVEGQ
MTTTEQFGNIVLVSKPDGSQVRIKDVARLELGGQTYATSARINGQPISAIGVQLSPTGNA
LGTAKAVKAKLDELSKYFPAGVEYKIPYDTSKFVQISIEEVVKTLFEAMALVFLVMLVFL
QNIRYTLIPSIVVPISLLGAFATMNALGFSINVLTMFGLVLAIGILVDDAIVVVENVERI
MSQEGLPPREATRKAMGQITGAIIGITLVLMAVFIPMAFFSGSVGAIYRQFSLSMVASIF
FSALMALTLTPALCSTLLKPIEKGSHHEKKGFFGWFNRMFTSTTNHYQSLVERVLKKTFR
YMVIYGALIGAVVVLFMRLPSSFLPNEDQGYIITNIQLPPAASANRTLDVIKQVERYYQH
EKAVENIVAVQGFSFSGNGPNAALVFTTLKDWSQRGADQTADAVAGRAFGALFGGIRDAI
VFPLNPPPIPELGNATGFTFRLQDRGGLGHDALMAARNQLLGMAAQSKVLKSVRPDGLED
SPQYQVDIDREKANALGVAFADINAVLSTALGSAYANDFPNYGRQQRVIVQADRINRMQP
EDIMNLFVRNTQGSMVPMSAFAKGHWIVGPVQLVRYNGYPSIRISGDAATGASTGEAMDE
MERLASKLPAGIGFEWTGQSLQEKSSGSQAPALYALSLLAVFLVLAALYESWSIPAAVIL
VVPLGVLGALLGVTLRVMPDDVYFKVGLIAVVGLSAKNAILIIEFAKDLQAQGKGLIEAT
LEAVHLRFRPIIMTSFAFILGVLPLAIATGASSASQRAIGTGVMGGMIAATVLAVVLVPV
FFVVVRRVFKGSERQRRLDAAHLPLDEEI