Protein Info for RALBFv3_RS09440 in Ralstonia solanacearum IBSBF1503

Annotation: multidrug transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 514 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 18 to 480 (463 residues), 399.5 bits, see alignment E=1e-123 PF02321: OEP" amino acids 80 to 269 (190 residues), 80.9 bits, see alignment E=5.3e-27 amino acids 302 to 478 (177 residues), 102.6 bits, see alignment E=1.2e-33

Best Hits

Swiss-Prot: 49% identical to OPRM_PSEAE: Outer membrane protein OprM (oprM) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 99% identity to rsc:RCFBP_21438)

Predicted SEED Role

"RND efflux system, outer membrane lipoprotein CmeC" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (514 amino acids)

>RALBFv3_RS09440 multidrug transporter (Ralstonia solanacearum IBSBF1503)
MYKSMTFRMPALLPALLLAAGVLSGCSLAPRYERPDAPVAGDYPQAPAGYAVPADTAKPG
ENAPRATELGWREFFPDPRLQKLIGLALENNRDLRVAVLNIEAARAQYRLQIADLLPAVN
ASATYTRSLTPQSISQTGQDINTKQYQLGVGISSYQVNLFSVGDVTSSARASYLATEEGQ
RATQISLISQVAKAYLNERAYAEQLELAQQTLKGREDYYKLAKQRFDVGASSALDLRQNE
TLVESARVSVAQLTRQYAQATNALVLLVGAPLPADLPAPTTVSSEKIVADIPPGLPSDLL
IQRPDIRQAEQKLIAANANIGVARAAFFPSIGLTSNVGTASTALHDLFKSGTGLWSFVPN
ATLPIFNWGTNLFNLDLTKANQKIALANYEKTIQTAFQEVSDALVARGTLEEQVAAQKRF
RDATAERLTLSDQRYRNGVSSFLDVLDAQRDLFSADQTLVQTRLARLTNAIDLYTALGGG
LQERSTIMAAQQARPTAAPGATPNVSPDMTPPAK