Protein Info for RALBFv3_RS08170 in Ralstonia solanacearum IBSBF1503

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1366 transmembrane" amino acids 305 to 322 (18 residues), see Phobius details amino acids 328 to 335 (8 residues), see Phobius details amino acids 337 to 340 (4 residues), see Phobius details amino acids 349 to 371 (23 residues), see Phobius details PF20155: TMP_3" amino acids 82 to 273 (192 residues), 220.3 bits, see alignment E=1e-69 TIGR02675: tape measure domain" amino acids 157 to 231 (75 residues), 83.2 bits, see alignment 6.2e-28

Best Hits

KEGG orthology group: None (inferred from 90% identity to rso:RSc0873)

Predicted SEED Role

"putative tail length tape measure protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1366 amino acids)

>RALBFv3_RS08170 membrane protein (Ralstonia solanacearum IBSBF1503)
MSQRISILVALDGADEGLKRAITSAERSLGELAASAKTAGDKAAAGIAQVKAGVSVISEQ
ITTARTQLFAFLSINWAVGKAQEIVQIADAWNMMAARLKLATAGQREFTTAQTALFDIAQ
RIGVPIQETATLYGKLQQAVRMLGGEQQQALTITESISQALRISGASANETQSALLQFGQ
ALSAGVLRGEEFNSVVENSPRLAQALADGLNVPIGRLRKMAEEGRLTADVVVNALLSQKD
KLATEYAQLPATVSQAFERLRNAFGQYVNQVDQATGFTGKLAGALTWLAQNLDAVMQWLK
RIAEVGLAVLVYRLLPALITAWQTAGAAAVTAASATSAAWATANLSVSAAIASVGLLRTG
FATLGAFLVGWEIGTWLSEKFETVRRAGIFMVEVLIRSVEELRFHWEVFTAIFTSDTIAE
ATKRHQARLGEMNRVFAQMYADAGRGADAAKGAMSAAAGAAEESARRLEAVRQGTQEAVG
RGAEAVHTALEKLKSRIGEVESAVSKASQTVGDSTAKMAEAYKGFGSIVEANLQRQVEVV
KARHQQEQAALERSGQTQAVQIARSTQLLVEALALQTALRRQAAADALKLIDDESRARLD
AAARDGKTETERAANVQRVENEILATRRQTLTQAAAEYRQHIDALNAEANRHLAEVRRIE
DEKRQLSMSTEERIRDIRRQGMTDFEAQEDRKRQITEYQASARAALADGEFDQARQRAST
AMDLAAQVASTQSNEAKRAEDARQQSEQAVTQAAQLEAQAREARGRQEYVQAEAMQRKAD
ELRAQSAQRTADADAQAVQGKMAVNEAIGRIRDSEAILNQTLDAEAQAHQRAAQSAVSAR
QGIQQTLAQTDNQVAQLTAKLQQGLKVTIDADTQRFDKAIADLDKALAERARLVVIQADL
QQAEKTLQDYEQRLKEGKTLPVDADVSKALASLDRLNAYARENSQLELRVATEKARAAIA
NVEGMLRALDRVQTESRHRVASNVDAVRAEVQSLNGMNTSSTHTIAVRRVEANAAGGEVG
AGVRQFADGGAVTPTFPRMQGGSVPGTGDQDTVPRTLDAGAFVIRKAAVRKYGAGTLAQL
ANGVARFASGGAVLFAGRGGSQPGGAKRNRDVFEARRMIDLGQQGMSDYTSWAQHNGGAW
VSSDMRARTMTTYGRQAERDRQALDALADRKQLTAAERQTVERVKTMWRQAMAQPMLWGQ
DLERDLLDYMEQHQGEFYRDGGVAASDTVPAMLTPGEYVVNRQAVARHGVGFFDAINNLA
LPARALANQVRGYATGGLVQPLASMAARASQAVAGGWKGADPAAALSQVLATSMRVPVPA
YAADVAPARTIRVELASGGRTVAATIDARDEARLLELLKEAQSRAL