Protein Info for RALBFv3_RS07740 in Ralstonia solanacearum IBSBF1503

Annotation: type II secretion system protein GspD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 809 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF21305: type_II_gspD_N0" amino acids 57 to 126 (70 residues), 94.1 bits, see alignment E=5.4e-31 TIGR02517: type II secretion system protein D" amino acids 57 to 710 (654 residues), 649.2 bits, see alignment E=3.1e-199 PF03958: Secretin_N" amino acids 154 to 214 (61 residues), 57.8 bits, see alignment 1.6e-19 amino acids 217 to 298 (82 residues), 52.9 bits, see alignment E=5.2e-18 amino acids 305 to 437 (133 residues), 50.7 bits, see alignment E=2.6e-17 PF00263: Secretin" amino acids 538 to 705 (168 residues), 177.4 bits, see alignment E=2.9e-56

Best Hits

KEGG orthology group: K02453, general secretion pathway protein D (inferred from 99% identity to rsc:RCFBP_10323)

Predicted SEED Role

"General secretion pathway protein D"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (809 amino acids)

>RALBFv3_RS07740 type II secretion system protein GspD (Ralstonia solanacearum IBSBF1503)
MNDETMHNASSRHTVRAIVLACCATMVAGSLPVTPAFAAPPASQAPAASNAGDEVSLNFV
NADLETVVKAVGQATGKNFIVDPRVKGTVNLVTEKPVTRAQALESLGSILRMQGYAIVEG
NGFTKVVPEADAKLQGSPTSVGTGSARGGEQVVTQVFRLQYESANNLVPVLRPMIAPNNT
ITAYPANNTLVITDYADNLRRIARIIASIDSPAAGETELIPLKNAVAIDAAATLQKLLDP
SGTAGGAGGGAGAALADPSLRTSVVAEPRSNSVLVRASSAARMAQAKQLLARLDVPGTRP
GNIWVVPLKNANAVQLATTLRAIVAADATLSASQSGGPGGQSAAQGAQAQQPATTGTQSS
QSTQTGSYGGGASGSSGSGMGSGNSSFRASFGQSNLPTTGGIIQADPATNALIITASEPV
YRNLRTVIDDLDARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGV
GNILNLGVVAATVGSGGIGSTAAQTALGTITGSNVSSLNGGNFGVFNKNTGLGAILSALG
SDGSVNVLSTPNLITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITL
RVKPQITDGGLVKMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLE
DNYQDSEQKVPGLGDIPILGALFRSESKERKKTNLLVFLRPYILRTAEATGTLSDNRYNY
MRQTQQGFVSPNVLPTTSDRDTPVLPSPESMRPAQNYGDVSVVPKGQTGVQVPPGAPMPQ
GTTRSEPRLQNFAPPTSGGYDSNAPRNGG