Protein Info for RALBFv3_RS07655 in Ralstonia solanacearum IBSBF1503

Annotation: NAD(P)H dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 PF02525: Flavodoxin_2" amino acids 5 to 172 (168 residues), 156.6 bits, see alignment E=6.8e-50 PF03358: FMN_red" amino acids 45 to 116 (72 residues), 35.1 bits, see alignment E=9.6e-13

Best Hits

Swiss-Prot: 44% identical to KEFG_PECCP: Glutathione-regulated potassium-efflux system ancillary protein KefG (kefG) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: K11746, glutathione-regulated potassium-efflux system ancillary protein KefF (inferred from 96% identity to rsc:RCFBP_10342)

Predicted SEED Role

"Glutathione-regulated potassium-efflux system ancillary protein KefF" in subsystem Glutathione-regulated potassium-efflux system and associated functions or Potassium homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (182 amino acids)

>RALBFv3_RS07655 NAD(P)H dehydrogenase (Ralstonia solanacearum IBSBF1503)
MSPLRILVIYAHPAQRRSRANKPLASMLAGLPGVAMHDLYWRYPEFDIDVRAEQQAMEAA
DVVVFQFPVQWYATPSLLKEWLDVVLEMGWAYGPGGEALRGKHMLVLATTGGRAHAYSPD
GVHGPPFDLFLLPLQQTAALCGMHWLSPHVLHDADDASQPVLDAHLEQVRATLQPWLAAV
SA