Protein Info for RALBFv3_RS07480 in Ralstonia solanacearum IBSBF1503

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 transmembrane" amino acids 40 to 60 (21 residues), see Phobius details amino acids 75 to 95 (21 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 162 to 180 (19 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 244 to 263 (20 residues), see Phobius details amino acids 275 to 296 (22 residues), see Phobius details amino acids 308 to 326 (19 residues), see Phobius details amino acids 332 to 353 (22 residues), see Phobius details amino acids 365 to 384 (20 residues), see Phobius details amino acids 392 to 414 (23 residues), see Phobius details PF07690: MFS_1" amino acids 42 to 261 (220 residues), 108 bits, see alignment E=5.1e-35 amino acids 245 to 420 (176 residues), 50.7 bits, see alignment E=1.3e-17 PF00083: Sugar_tr" amino acids 71 to 219 (149 residues), 34.3 bits, see alignment E=1.3e-12

Best Hits

Swiss-Prot: 45% identical to YYBF_BACSU: Uncharacterized MFS-type transporter YybF (yybF) from Bacillus subtilis (strain 168)

KEGG orthology group: K08224, MFS transporter, YNFM family, putative membrane transport protein (inferred from 97% identity to rsc:RCFBP_10379)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (425 amino acids)

>RALBFv3_RS07480 MFS transporter (Ralstonia solanacearum IBSBF1503)
MNAPSSPPATPVPAAHATMEPADPARWLVRGSPGYRRANLALFAAGFSTFSLLYCVQPLM
PLLGHDFGLSPAQTSLVLSATTMLLAFAILFAGLLSESIHRKTLMGVSLVLSSVLTLAAA
VLPGWQGLLATRAVLGIVLGGVPAVAMAYLAEEVHPQGLGMAMGLYVGGTAFGGMAGRVL
TGMVADHAGWRFAMGFTGALCLLAALAFAWLLPPSRRFVPRRGVALADLVDTLAEHLREP
GLRALFAMAFLLMGGFVTIYNYASYRLLGAPYALSHSAVGAIFMVYLLGIGASTWFGRLA
DRHGRGRVLLAGTAAMSAGVLMTLAMPLGLVIGGIALLTFGFFGAHAVASGWVGRRAKRA
KGQAAALYLLAYYLGSSIAGTAGGKLYARWGWPGVVALVTAMLACALLTAAWLWRRAPLL
PGAKR