Protein Info for RALBFv3_RS07420 in Ralstonia solanacearum IBSBF1503

Annotation: glucan biosynthesis protein D

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 535 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF04349: MdoG" amino acids 39 to 527 (489 residues), 648.4 bits, see alignment E=4.1e-199

Best Hits

Swiss-Prot: 92% identical to OPGD1_RALSO: Glucans biosynthesis protein D 1 (opgD1) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K03670, periplasmic glucans biosynthesis protein (inferred from 98% identity to rsc:RCFBP_10390)

Predicted SEED Role

"Glucans biosynthesis protein D precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (535 amino acids)

>RALBFv3_RS07420 glucan biosynthesis protein D (Ralstonia solanacearum IBSBF1503)
MHRRDLLKQLAAGFLALASGLTPTATPAAPLASASTEPFDEARLRQHARALAAQPYHPRN
AVLPPPLARLGWDAYQSIGYRADHALWAGQRLPFEARFFHLGLFFKSPVRMHEVVDGQSR
VIAYDPAMFDYGKSGLDHASLPADLGFAGFRLTTRADPTRDVAAFLGASYFRAVGGQWQY
GMSARGLAIDTGLRHAEEFPDFTEFWLVRPAPQADTLRVYALLDSPSVAGVYRFDIRPGD
TLAMDVQATLFVRKPIERLGIAPLTSMFLYGENDRTDRAGDRRSAARRWRASDWRPEIHD
SDGLAIWRGSGEWIWRPLANPPALRSQRFADDGPRGFGLLQRDRNPDHYQDDGVFYEKRP
SVWVEPLHGWGEGAVELVELSAADETFDNIVAFWRPAVAPQAGQELAFGYRLSWGAQPPA
APPLARVVATRTGIGGIVGQPRRYFSWRFVVDFAGGELGRLGGAAIEPVIRVSRGRVEIV
SARPLASIDGVRAMFDLVPDADNAPIELRLTLQSGDRPLSETWAYQWTPPTDRAV