Protein Info for RALBFv3_RS07375 in Ralstonia solanacearum IBSBF1503

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 transmembrane" amino acids 9 to 31 (23 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 101 to 123 (23 residues), see Phobius details amino acids 151 to 174 (24 residues), see Phobius details amino acids 207 to 225 (19 residues), see Phobius details amino acids 259 to 279 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 81 to 282 (202 residues), 67.4 bits, see alignment E=6.9e-23

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 98% identity to rpf:Rpic12D_2983)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>RALBFv3_RS07375 sugar ABC transporter permease (Ralstonia solanacearum IBSBF1503)
MNKPLNNKAWFLILPVFLCVAFSAILPLMTVVNYSVQDIISPEQHVFVGVDWFRQILRDG
DLQDALTRQLIFSLCVLAVEIPLGIGLALAMPSKGWKASAALVVLAMPLLIPWNVVGTIW
QIFGRSDIGLAGYWLNRMGVDYNYTSHSFDAWITVLIMDVWHWTPLVALLAYAGLRSIPD
AFYQAAEIDGASRLAVFRYIQLPKMRGVLMIGVLLRFMDSFMIYTEPFVLTGGGPGNATT
FLSQYLTQKAVGQFDLGPAAAFSIVYFLIILLFCFVLYNWMQRVGSASAAVGDDHA