Protein Info for RALBFv3_RS06175 in Ralstonia solanacearum IBSBF1503

Annotation: HlyC/CorC family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 transmembrane" amino acids 6 to 32 (27 residues), see Phobius details amino acids 62 to 86 (25 residues), see Phobius details amino acids 95 to 118 (24 residues), see Phobius details amino acids 130 to 156 (27 residues), see Phobius details PF01595: CNNM" amino acids 13 to 183 (171 residues), 153.3 bits, see alignment E=8.2e-49 PF00571: CBS" amino acids 206 to 263 (58 residues), 17.4 bits, see alignment E=7.2e-07 amino acids 278 to 327 (50 residues), 29.1 bits, see alignment 1.5e-10 PF03471: CorC_HlyC" amino acids 345 to 418 (74 residues), 60.8 bits, see alignment E=1.6e-20

Best Hits

KEGG orthology group: None (inferred from 95% identity to rso:RSc2824)

Predicted SEED Role

"Magnesium and cobalt efflux protein CorC" in subsystem Copper homeostasis: copper tolerance or Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (425 amino acids)

>RALBFv3_RS06175 HlyC/CorC family transporter (Ralstonia solanacearum IBSBF1503)
MNSWPLWAQLGAIVLLLCCSAFFSISETSLMALNRHRLRHLAKSNVAGARRTQGLLGQTD
KLLSLILIGNNLINTAVPVLIANLAIHHFGNSGTTLSIATAVVAFLIIVFCEIAPKIVGA
TYPERISFPASFIIAPLMRLATPLVTVVNAFATGLLRLVRINPRAAPEQRMSAEELRTLV
LESGNFIPHKHRSILLNLFDLDAITVDDVMTPRARVESLDLSRPIGEVIQQLETCYHNKL
PVFEQDTDQVLGILHVRKALSLLGHTELTHDDFRNLLSKPYFVPSGTPVFRQLQYFQENR
RRIGLVINEYGDMLGLVTLEDIIEEMIGEFTTTLPNAGKLAWDTQGTYLADAGMSLRDLN
RRLGLQLPTDGPKTLNGLVLEVLEEIPEAPVSVRIAGCVMDIVQMDSQSIRTVRLRRPAA
GEKHS