Protein Info for RALBFv3_RS05020 in Ralstonia solanacearum IBSBF1503

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 transmembrane" amino acids 36 to 56 (21 residues), see Phobius details amino acids 62 to 89 (28 residues), see Phobius details amino acids 99 to 120 (22 residues), see Phobius details amino acids 128 to 153 (26 residues), see Phobius details amino acids 173 to 191 (19 residues), see Phobius details amino acids 198 to 217 (20 residues), see Phobius details amino acids 254 to 275 (22 residues), see Phobius details amino acids 287 to 308 (22 residues), see Phobius details amino acids 320 to 339 (20 residues), see Phobius details amino acids 351 to 371 (21 residues), see Phobius details amino acids 383 to 407 (25 residues), see Phobius details amino acids 413 to 433 (21 residues), see Phobius details PF00083: Sugar_tr" amino acids 27 to 235 (209 residues), 82.4 bits, see alignment E=3.4e-27 amino acids 252 to 423 (172 residues), 40.3 bits, see alignment E=2e-14 PF07690: MFS_1" amino acids 38 to 339 (302 residues), 103.8 bits, see alignment E=9.3e-34 amino acids 306 to 435 (130 residues), 40.2 bits, see alignment E=2.1e-14

Best Hits

KEGG orthology group: K03762, MFS transporter, MHS family, proline/betaine transporter (inferred from 98% identity to rsc:RCFBP_10877)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>RALBFv3_RS05020 MFS transporter (Ralstonia solanacearum IBSBF1503)
MQATAAPRQGERASAPALSAATRRKAIIAATIGNGLEWFDFTVYSFFAVIIARLFFPTGN
DLTSFLLTVATFGVGFFMRPVGAVVLGIYADRAGRKASLTLTILLMALGTALIGLAPTYA
QIGIGAPVLIVIARLIQGFSAGGEVGGATAFLIEYAPDDRRGYFASWQQASQGISFILGA
AMGALVTNGLSPAQIDAWGWRIPFLFGLLIGPVGMYIRSKLHEPPAFEARQARAARESRL
APLAHVLREHPREVLGGLGVTILWTVCTYTLVFYMPTYAKQQLGLPLGATFQSTALCGAI
IFVLCPLMGTLSDRVGRKRMLGTVALVIAAAAYPLFHWLNASPTVQTLLQVQILLGVLLA
AFTGPAPAVLAEQFPTAVRSTGLSIAYNLAVTLFGGFAPLIVTWLIASTGSKLAPSYYVM
AAGIVSTLALAWMHDRTGKAIE