Protein Info for RALBFv3_RS04220 in Ralstonia solanacearum IBSBF1503

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 transmembrane" amino acids 31 to 49 (19 residues), see Phobius details amino acids 69 to 89 (21 residues), see Phobius details amino acids 101 to 124 (24 residues), see Phobius details amino acids 130 to 150 (21 residues), see Phobius details amino acids 160 to 182 (23 residues), see Phobius details amino acids 194 to 216 (23 residues), see Phobius details amino acids 259 to 281 (23 residues), see Phobius details amino acids 293 to 313 (21 residues), see Phobius details amino acids 325 to 344 (20 residues), see Phobius details amino acids 350 to 370 (21 residues), see Phobius details amino acids 377 to 399 (23 residues), see Phobius details amino acids 417 to 437 (21 residues), see Phobius details PF07690: MFS_1" amino acids 39 to 401 (363 residues), 151.7 bits, see alignment E=2.7e-48

Best Hits

Swiss-Prot: 52% identical to TUB4_AGRVI: Putative tartrate transporter (ttuB) from Agrobacterium vitis

KEGG orthology group: None (inferred from 97% identity to rsc:RCFBP_11079)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>RALBFv3_RS04220 MFS transporter (Ralstonia solanacearum IBSBF1503)
MATTTPPIGPGAATLPPQSASGFEQATYRKVSWRLIPFLLLCYVVAYLDRVNVGFAKLQM
LSDLKFSETVYGLGAGIFFIGYFLFEVPSNVILHRVGARMWIARIMISWGIVSAAMMFVT
TPAMFYAMRFLLGLAEAGFFPGIILYLTYWYPAHRRGRTITFFMTAVALSGVIGGPISGW
ALKTFAGVYGLAGWQWMFVIEGIPSIIIGLCVLAYLDNRIRDATWLTDDEKALLARNIAA
EEAQKEDAPIAAVMASPRVWLMSLIYFSFVMGLYGVSFWLPTLIKQTGVADPLAVGLLTA
IPYGAAVVAMVLVARSADRTRERRWHIAVPALAGAIGLVLSAVWHADTALAMAALTLGTM
GILTTLPLFWSLPTAFLAGTGAAAGIALINSLGNLAGFLSPYAVGWLKDTTQSTDSGMYL
LAASMVMGALLTLSVPARMVNK