Protein Info for RALBFv3_RS03620 in Ralstonia solanacearum IBSBF1503

Annotation: DNA polymerase III subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1174 TIGR00594: DNA polymerase III, alpha subunit" amino acids 6 to 982 (977 residues), 1184.7 bits, see alignment E=0 PF02811: PHP" amino acids 8 to 180 (173 residues), 136 bits, see alignment E=4.2e-43 PF07733: DNA_pol3_alpha" amino acids 299 to 569 (271 residues), 348.4 bits, see alignment E=7.6e-108 PF17657: DNA_pol3_finger" amino acids 572 to 736 (165 residues), 213.7 bits, see alignment E=2.7e-67 PF14579: HHH_6" amino acids 811 to 900 (90 residues), 109 bits, see alignment 2.8e-35 PF20914: DNA_pol_IIIA_C" amino acids 1111 to 1162 (52 residues), 28.9 bits, see alignment (E = 2e-10)

Best Hits

KEGG orthology group: K02337, DNA polymerase III subunit alpha [EC: 2.7.7.7] (inferred from 79% identity to bac:BamMC406_2232)

Predicted SEED Role

"DNA polymerase III alpha subunit (EC 2.7.7.7)" in subsystem DNA-replication (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1174 amino acids)

>RALBFv3_RS03620 DNA polymerase III subunit alpha (Ralstonia solanacearum IBSBF1503)
MNSPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGK
GVKPVVGADVWITNHDERDKPGRLLLLVRNKQGYLNLCTLLARAWLSNQHRGRAEIAPEW
FDEPGVEDAPLSTGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQAFYIELQRA
GQAGTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDLLANPRRTRR
FSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYL
VHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAK
NNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRD
RVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVT
LEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYT
QGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSRADWNCSHIPL
NDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCA
RKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAE
EMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH
PAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFTPTDAKTIRYGLGG
VKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNDNRAQL
LVSIGLAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPWSTKRKLQEEKQALGF
YLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGGGYGSRDARNKTVSGVIVGLRTQ
MTQRGKMIVVMLDDGSQSEATEVTVFNELFDANRGLFKEDEVLIVQGNARHDTFTGGVRM
TAEAVMDLTQARSRYAEALGLVLRDDASAARLRELLTPYLATQASGVRVHISYAANGACC
KAVLGEQWQVTPSDEVLASFRSALSNENVYMIYG