Protein Info for RALBFv3_RS03495 in Ralstonia solanacearum IBSBF1503

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 55 to 77 (23 residues), see Phobius details amino acids 88 to 107 (20 residues), see Phobius details amino acids 113 to 135 (23 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 175 to 195 (21 residues), see Phobius details amino acids 222 to 241 (20 residues), see Phobius details amino acids 260 to 279 (20 residues), see Phobius details amino acids 290 to 311 (22 residues), see Phobius details amino acids 318 to 339 (22 residues), see Phobius details amino acids 351 to 373 (23 residues), see Phobius details amino acids 379 to 400 (22 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 251 (230 residues), 104.3 bits, see alignment E=1e-33 amino acids 263 to 396 (134 residues), 74.6 bits, see alignment E=1.1e-24 PF00083: Sugar_tr" amino acids 55 to 164 (110 residues), 23.3 bits, see alignment E=4.2e-09 amino acids 254 to 342 (89 residues), 24.6 bits, see alignment E=1.8e-09 PF12832: MFS_1_like" amino acids 206 to 383 (178 residues), 31.8 bits, see alignment E=1.3e-11

Best Hits

KEGG orthology group: None (inferred from 76% identity to pag:PLES_22791)

Predicted SEED Role

"Multidrug-efflux transporter, major facilitator superfamily (MFS) (TC 2.A.1)" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>RALBFv3_RS03495 MFS transporter (Ralstonia solanacearum IBSBF1503)
MVQVSMDEQSVGQWRRNLAVCFFGAFTTVFAMTLILPFLPVYVGQLGVAGHAAVVQWSGI
AYSATFVTAGVVAPIWGMLGDRYGRKPMLVRASLGMALTMSLMGLATDIWQFVGLRLLAG
IAGGYASGATILIAVQAPKTRSAWALGLLSSGVMAGNLLGPLVGGSLPPLIGIRATFWGA
GMLIFIAFLATLVLLREIPSTVAASVAKERPKGGWSQMSHKGVVAAMLATGLLLMIANMS
IEPILTVYVESLISDPKQVTFLSGLVMSAAALGSLISASQSGKVADQIGHSTVIILALTV
AGLLLIPQAFVTAGWQLVALRFLMGLALGGLLPCIAAVIRHNVPDHDVGAAMGWSLSSQF
AGQVAGPLIGGFVGGQFGMHAVFLGTSLLMLLGAAFNWRAVGFFSRG