Protein Info for RALBFv3_RS03220 in Ralstonia solanacearum IBSBF1503

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 88 to 110 (23 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 150 to 172 (23 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 228 to 246 (19 residues), see Phobius details amino acids 252 to 272 (21 residues), see Phobius details amino acids 281 to 300 (20 residues), see Phobius details PF06181: Urate_ox_N" amino acids 4 to 299 (296 residues), 468.7 bits, see alignment E=4.1e-145

Best Hits

KEGG orthology group: None (inferred from 92% identity to rsl:RPSI07_1318)

Predicted SEED Role

"conserved hypothetical membrane protein, paralogue of Y20848"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>RALBFv3_RS03220 membrane protein (Ralstonia solanacearum IBSBF1503)
MEGYLLDWANLLLRWLHVITAIAWIGSSFYFVWLDNSLTRPTAPDLLEKGVDGELWAVHG
GGFYHPQKYLLAPKQLPEHLHWFYWESYSTWMSGFALLTVVYLFNANVYLIDRSVFDMTA
TTAVLLALAFLAVGWLVYDAICRVFGRSDRVVGVLVVIYVVIAAYAACHLFSGRAAFLLV
GAMIATIMSANVFFWIIPGQRKVVAALKAGEKPDPIHGKRGKQRSVHNTYFTLPVLFAML
SNHYSMTYGHTSNWVVLVLIMLAGVLIRQFFILKHKGVWNGWYPAGGVVLLLGTAVWLAP
VQRASAPQANAAAAVATPSALAAQGGAAAPGGADFAKVQAVVTARCYQCHSAHPTLMPSP
AKGVLLDTPDQLAAHAQLVYQQAVQQKLMPLGNVTQMTDEERTVIAKWFEGGARTAN