Protein Info for RALBFv3_RS03150 in Ralstonia solanacearum IBSBF1503

Annotation: xanthine dehydrogenase accessory protein XdhC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 PF02625: XdhC_CoxI" amino acids 18 to 75 (58 residues), 74.2 bits, see alignment E=6.2e-25 TIGR02964: xanthine dehydrogenase accessory protein XdhC" amino acids 25 to 315 (291 residues), 340.3 bits, see alignment E=3.5e-106 PF13478: XdhC_C" amino acids 172 to 314 (143 residues), 117.3 bits, see alignment E=6.4e-38

Best Hits

KEGG orthology group: K07402, xanthine dehydrogenase accessory factor (inferred from 96% identity to rsc:RCFBP_11292)

Predicted SEED Role

"XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>RALBFv3_RS03150 xanthine dehydrogenase accessory protein XdhC (Ralstonia solanacearum IBSBF1503)
MDHTQLRPFRFADALAAVRAGQPCVLVTVVDVQGSAPREPGTLMLVCGDGFFGTIGGGHL
EWRAMEIAQAMMDAPEAGGQARRQCMRIPLGPALGQCCGGVVRLSLERLDTRDAAWIAMA
DEAMRQRRSVRRFVPADASLPVEATIGDAAAAGVLLDANGFTQTVLPPDMPIVLCGAGHV
GHAIVRALAHLPCRVTWVDERDAMFPAEVPANVVIEATDTPQAVIDAAPAGAYFLVMTHN
HALDLALCERIMRRTDFAYFGLIGSKTKRARFEHRMVEHGVDPARLPEMVCPIGVAGIAD
KAPDIIAVSVVAQLLQVREQQRHALASACRCAAVPYRVPTSA