Protein Info for RALBFv3_RS03105 in Ralstonia solanacearum IBSBF1503

Annotation: LysE family translocator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 42 to 64 (23 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 111 to 131 (21 residues), see Phobius details amino acids 140 to 165 (26 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details PF01810: LysE" amino acids 17 to 196 (180 residues), 55.9 bits, see alignment E=2.1e-19

Best Hits

KEGG orthology group: None (inferred from 96% identity to rsc:RCFBP_11301)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (200 amino acids)

>RALBFv3_RS03105 LysE family translocator (Ralstonia solanacearum IBSBF1503)
MPVQETLFKLSLYVSLVLIVPGPTNTLLLSSGLKVGVRRTCPLILAEALGYVIAISLWGF
FLCSLASGRPWLLNAIKVLSAVYILYLAVKMWRQSRARQQVEAGPVSLRDMFITTLMNPK
ALLFASTLFPLEAFQSATYFAWAIAVFLIVLAPIGLGWSCLGVLLTSRRTWARHTPVLLR
GASLMLLMFSGTLMYSMLGR