Protein Info for RALBFv3_RS02865 in Ralstonia solanacearum IBSBF1503

Annotation: urea ABC transporter permease subunit UrtB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 536 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 243 to 268 (26 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details amino acids 302 to 322 (21 residues), see Phobius details amino acids 334 to 356 (23 residues), see Phobius details amino acids 385 to 403 (19 residues), see Phobius details amino acids 435 to 455 (21 residues), see Phobius details amino acids 469 to 494 (26 residues), see Phobius details amino acids 501 to 520 (20 residues), see Phobius details TIGR03409: urea ABC transporter, permease protein UrtB" amino acids 242 to 532 (291 residues), 424.3 bits, see alignment E=1.5e-131 PF02653: BPD_transp_2" amino acids 243 to 518 (276 residues), 155.1 bits, see alignment E=1.1e-49

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 98% identity to rsc:RCFBP_11348)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtB" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (536 amino acids)

>RALBFv3_RS02865 urea ABC transporter permease subunit UrtB (Ralstonia solanacearum IBSBF1503)
MTRFLAALLCALCLAAAPAASAWAVGQPLTQADLKPLAEDDFEAKVKVLDALAAAPAGQA
GPILQALQNDALFYAPATGMVRQDGERYLDAIGGQPVAVKTDDLQSLTLNNALRAQVDSA
ASGFALQSPDRAARAQAIDTLLVHPETASRTVVDAARKHETAPELRTRLHLLWANLALDD
GTHAEKLEALRLLAGDTNPQTRQRILPLLAKDSGADDALRAAAQAALDGLSAQQRKAELA
GNLFAGLSLGSVLLLAALGLAITYGLIGVINMAHGEFLMIGAYATYVVQTIFRNHFPGAF
DWYLPAALPAAFLAAAVVGFALERSVLRHLYGRPLETLLATFGVSLLLMQAVRSLFGAQN
VEVANPSWMSGGIALYPGLILPTNRLVILAFALVVVAMAWAVLNRTRLGLFVRATTQNRT
MAACVGVRTWKVDSYAFAFGAGIAGLGGCALSQIGNVGPDLGQSYIIDSFMAVVLGGVGQ
LAGTIIGAFGLGLINKFIEPFYGAVLAKIFVLVLIVLFIQKRPQGLFALKGRSAEA