Protein Info for RALBFv3_RS01960 in Ralstonia solanacearum IBSBF1503

Annotation: AcrB/AcrD/AcrF family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1032 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 334 to 351 (18 residues), see Phobius details amino acids 358 to 379 (22 residues), see Phobius details amino acids 385 to 405 (21 residues), see Phobius details amino acids 425 to 448 (24 residues), see Phobius details amino acids 461 to 486 (26 residues), see Phobius details amino acids 519 to 538 (20 residues), see Phobius details amino acids 842 to 865 (24 residues), see Phobius details amino acids 872 to 892 (21 residues), see Phobius details amino acids 901 to 924 (24 residues), see Phobius details amino acids 947 to 966 (20 residues), see Phobius details amino acids 977 to 1002 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1002 (999 residues), 744.6 bits, see alignment E=2.6e-227 PF02355: SecD_SecF" amino acids 332 to 480 (149 residues), 29.3 bits, see alignment E=8.3e-11

Best Hits

KEGG orthology group: None (inferred from 99% identity to rsc:RCFBP_11545)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1032 amino acids)

>RALBFv3_RS01960 AcrB/AcrD/AcrF family protein (Ralstonia solanacearum IBSBF1503)
MNFATWSIRNPVPAILLFILLTLAGLYGFRELPVANLPDLDLPSVTISLTQPGAAPAQLE
TEVARKVENSLATLSGVKHMRTSITDGQVSITLEFILEKKLSDALIETKDAVDRIRSDLP
VDLQQPSISAVRIGGEATLLYAIASSRMNEEALSWFVDDTVNKTVLGVPGVGKFERVGGV
QRQVRVEVDPVRLAALGATAVDVSRALKTVEQESSGGRGQLGGAEQAVRTIATVRQAEEL
NRLPLVLSDGRRVNLDQVATVSDAIAERTQIALLDGKPVVGFKIYRAKGFDETRIAAGVA
QALGKLQAANPGLSFTKISGTVDYTQEQFEGSMHMLYEGALLAVLVVWWFLRDWRATLIS
ASALPLSILPAFAAMHWLGYSLNTLTLLALAVIVGILVDDAIVEIENIERHSRMGKPIKQ
AAGEAVTEIALAVIATTMTLVVVFMPTAMMSGVPGLFFKQFGWTAVVAVLSSLLVARVLT
PMLAAYLLKPHAGTTEAKDGALMTRYLGWVRWCLAHRRLTLVAAVAIFIGSAALVPLLKT
GLIPPSDRGYSSVSVELPPGSSLAATRATTEAARRGMGPIKGIDHVMTTVGDAQSVGGGQ
TQAGEVRRATMTLVLAPRGERPSQADIETQVRRALINVPGARFSLGVGGPGEKMSLILAS
EDTAALKATGQALERQLRGVPGLANVTSTASLERPEIVVRPNAQRAAEQGVTTAAIGETV
RIATNGDFDAQVAKLNLDNRQVPIQVRIPDAARQDMDVVANLRVHGRNGLVPLASVADIA
VESGPSQIDRYDRRRYVTVNADLGGTPLGQALAEAKALPAAQAMPSSVKLIETGDAEIMM
ELLGGFGMAIVIGLLCVFCVLVLLFHDFFQPLTILSAVPLSLGGAFVALLLSKGMLSIPS
MIGLVMLMGIVTKNSILLVEYAVVGIQERGLPLHEALIDACHKRARPIVMTTVAMIAGML
PIALGLGADASFRQPMAIAVIGGLVTSTGLSLLVVPVAFTYVDGLERRVRRFFSGSTAHT
GALPEDKEAAQA