Protein Info for RALBFv3_RS01875 in Ralstonia solanacearum IBSBF1503

Annotation: alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 PF00561: Abhydrolase_1" amino acids 24 to 136 (113 residues), 66.6 bits, see alignment E=8.6e-22 PF12146: Hydrolase_4" amino acids 25 to 238 (214 residues), 62.5 bits, see alignment E=1.2e-20 PF12697: Abhydrolase_6" amino acids 26 to 260 (235 residues), 81.3 bits, see alignment E=5.2e-26 PF06821: Ser_hydrolase" amino acids 48 to 129 (82 residues), 30.6 bits, see alignment E=9.2e-11 PF00975: Thioesterase" amino acids 51 to 116 (66 residues), 31.5 bits, see alignment E=6.3e-11 PF00756: Esterase" amino acids 77 to 123 (47 residues), 25 bits, see alignment 4.4e-09

Best Hits

KEGG orthology group: None (inferred from 95% identity to rsc:RCFBP_11557)

Predicted SEED Role

"PROBABLE HYDROLASE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (274 amino acids)

>RALBFv3_RS01875 alpha/beta hydrolase (Ralstonia solanacearum IBSBF1503)
MEWTVQGQRAYAYTGGKPFDPALPCVVFVHGAQNDHSVWGLQTRWFAHHGFSVLAVDLPA
HGRGTGTPLTTVEAMADWVVALAQAAGVTRPAMVVGHSMGSLIALECAARYPDQVDRIAL
VATAWPMNVSDALLDAALNDTPAAIDMVNTWSHSSLANKPSAPGPGFWMHGGSQRLMERI
ARGSQAPVFHTDFSACNTYARGAEAMAAVRCPALVIVGDKDQMTPARAGRQVAAGLAGSR
VVTLPCGHAVMGECPDGTLDALIAFARERAAVAA