Protein Info for RALBFv3_RS01525 in Ralstonia solanacearum IBSBF1503

Annotation: outer membrane protein assembly factor BamD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 277 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details TIGR03302: outer membrane assembly lipoprotein YfiO" amino acids 18 to 261 (244 residues), 301.8 bits, see alignment E=1.7e-94 PF13512: TPR_18" amino acids 42 to 181 (140 residues), 151.8 bits, see alignment E=3.8e-48 PF13525: YfiO" amino acids 46 to 250 (205 residues), 221.6 bits, see alignment E=2.4e-69 PF13432: TPR_16" amino acids 50 to 117 (68 residues), 35.9 bits, see alignment E=2.2e-12 amino acids 90 to 132 (43 residues), 18.1 bits, see alignment 8.2e-07 PF13174: TPR_6" amino acids 57 to 77 (21 residues), 14.2 bits, see alignment (E = 1.4e-05)

Best Hits

Swiss-Prot: 46% identical to BAMD_NEIMA: Outer membrane protein assembly factor BamD (bamD) from Neisseria meningitidis serogroup A / serotype 4A (strain Z2491)

KEGG orthology group: K05807, putative lipoprotein (inferred from 100% identity to rsc:RCFBP_11635)

Predicted SEED Role

"Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (277 amino acids)

>RALBFv3_RS01525 outer membrane protein assembly factor BamD (Ralstonia solanacearum IBSBF1503)
MSVTSMKLARFRARIGAVMAAGVACLAISACGIMPEQQDETAGWSANKLYSEAKDALDGG
DYSKAVKYYEKLESRYPFGPFAQQAQIETAYANYKDGETAAALAAVDRFIQLHPNHPSVD
YAYYLKGLINFNDNLGWLGRFSNQDLSERDPKAARAAYDAFKTLITRFPNSKYTPDAAQR
MQYIVNAMAEHEVQAARYYYRRGAYLAATNRAQEAIKDYDRAPAVEEALYIMMKSYEALG
MKDLRDDTERIIKQNYPNSNFMLYGQRKKEKAWYQWW