Protein Info for RALBFv3_RS01115 in Ralstonia solanacearum IBSBF1503

Annotation: acyl-CoA dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 622 PF12418: AcylCoA_DH_N" amino acids 6 to 34 (29 residues), 40.8 bits, see alignment (E = 3.6e-14) PF00441: Acyl-CoA_dh_1" amino acids 306 to 473 (168 residues), 62.3 bits, see alignment E=1.2e-20 PF12806: Acyl-CoA_dh_C" amino acids 493 to 618 (126 residues), 111.7 bits, see alignment E=5.3e-36

Best Hits

KEGG orthology group: None (inferred from 97% identity to rsc:RCFBP_11771)

Predicted SEED Role

"3-methylmercaptopropionyl-CoA dehydrogenase (DmdC)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (622 amino acids)

>RALBFv3_RS01115 acyl-CoA dehydrogenase (Ralstonia solanacearum IBSBF1503)
MSSLLLSRRDLSFLLYEWLDVEALTRFPRYADHSRETFDAALDTCERIATDLFAPHNKKN
DQQEPHFDGTTVHIIPEVKAALEAFNKAGLMAAGQDFERGGMQLPTVVEKAGFGYFKAAN
VGTSSYPFLTIGNANLLLAHGTPAQIETFVQPELEGRFYGTMCLSEPQAGSSLSDIVTRA
EYEGESPLGPQYRLTGNKMWISAGEHALSDNIVHLVLAKIPGPDGKPIPGVKGISLFIVP
KFLVNADGSLGERNDVALAGLNHKMGYRGTTNCLLNFGEGTQFRPQGPDGQPRAGAIGYL
VGEPHKGLACMFLMMNEARIGVGMGATMLGYTGYLHALDYARNRPQGRPVGSSGKDAASP
QIRIVDHADVRRMLLAQKAYVEGALGLNLYCAKLVDEARGETDPAARARLGLLLDILTPI
AKSWPSQWCLEANSLAIQVHGGYGYTREYNVEQFYRDNRLNPIHEGTHGIQGLDLLGRKV
VMQDGAAFAALGERVQATVGRALECGDEALPGYGRALGMAAQRLAKVTQTLWAAGDPRVT
LANASVYLEAFGHVVIAWIWLEQALAAAKALPNAQGETADFYRGKLQAARYFFQWELPKT
GPQLALLASLDTTTLDMQDAWF