Protein Info for RALBFv3_RS00635 in Ralstonia solanacearum IBSBF1503

Annotation: ABC-F family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 PF00005: ABC_tran" amino acids 18 to 184 (167 residues), 69.5 bits, see alignment E=1.4e-22 amino acids 335 to 475 (141 residues), 69.1 bits, see alignment E=1.9e-22 PF12848: ABC_tran_Xtn" amino acids 224 to 309 (86 residues), 80.2 bits, see alignment E=2.9e-26

Best Hits

KEGG orthology group: None (inferred from 99% identity to rsc:RCFBP_11895)

Predicted SEED Role

"probable ATP-binding ABC transporter protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (540 amino acids)

>RALBFv3_RS00635 ABC-F family ATPase (Ralstonia solanacearum IBSBF1503)
MLSTANITMQFGPKPLFENISVKFGEGNRYGLIGANGCGKSTFMKILGGDLESSGGNVML
EPGVRLGKLRQDQFAYEDMRVLDVVMMGHTEMWAAAQERDAIYANPEATDDDYMKAAELE
AKYAEYDGYTAEARAGELLLGVGIPTDQHSGPMSNVAPGWKLRVLLAQALFSNPDVLLLD
EPTNNLDINTIRWLESVLNERNSTMIIISHDRHFLNSVCTHMADMDYGTLKVYPGNYDDY
MEASMQARERLQAANARAKERISDLQDFVRRFSANKSKARQATSRLKMIDKIKVEDIKPS
SRQNPFVRFEFEKKLHNLAVETDNARKTYDRKIFDGLTMAVRAGEKIAIIGENGAGKTTL
LRSLLNHSVKTGVQRGIEIDGGTVKWAEHANVGYMPQDTYEEFPEDRDLMDWMGQWTQAG
DDDQSLRGTMGRLLFSADDIKKNVKVLSGGEKGRMIWGKLMLGRHNVLALDEPTNHMDME
SIESLQIALDKFEGTLIFVSHDRELISGLATRVIEVRPNGTLTDYLGTYDEYLQSQGVEI