Protein Info for Psyr_5115 in Pseudomonas syringae pv. syringae B728a

Annotation: Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1205 transmembrane" amino acids 105 to 129 (25 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details amino acids 234 to 253 (20 residues), see Phobius details PF00270: DEAD" amino acids 288 to 425 (138 residues), 68 bits, see alignment E=8.9e-23 PF04851: ResIII" amino acids 300 to 423 (124 residues), 29.2 bits, see alignment E=8.5e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_5115)

Predicted SEED Role

"DEAD/DEAH box helicase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZL30 at UniProt or InterPro

Protein Sequence (1205 amino acids)

>Psyr_5115 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal (Pseudomonas syringae pv. syringae B728a)
MAEFDEQRLDLAEQVRLGLANESRLLPEHARAFVRGLQMTWRVPPIAWDEGETEKLVQDA
HRLIQAAEVCLDLEGPNSVSAKDCFRRAAELLEWLTRMQEEPSSFAPVGLLAAAAFQLGG
LPAMATALLGQLEITDDGTRLLSKFLSGDFNGVVEEILAFWGSYPELTKRDSSTQLLASS
EAGGLEWYFVVELVRSIGVIASSLMCGENERMQQGLRKLKALDKMATRTYGDELSMLISL
LTVVAEGYGSTSIYGPILQLVEIKPEREARLRRFARDQFGRGRGILWPSQLRGLERLLKS
SSFALCTPTGSGKTLVANLALIKELMLAPSEKSGPLALYLVPSRALAGEVEAKLLSELGS
DLVVTGLYGGSDWGITDYWLNAEKPTVLIATVEKADALMRYVGPLIVARLQLLIIDEAHQ
VVVADRDRAEVDFAEHSSRTLRLENFVSRLLARAPHIARVALTAVAGGAATPVACWVEGG
SQAEPIGANYRSTRQLIGTLTATPDEPGQMRIDLLNGAGLHVRGRARPVYIPLRILPMPK
PPAAIRNSLARYNQIHVLWTALHLVDGDRRVLISIAQQPEQTMKWFKDALDLPQWSDASK
FTPPNEPANQALFEKARASCIDYCGKNSYEVALLDRGIATSHGQMPQRLRRLMTSLIDRR
ICPITVATATLTEGVNLPFDLILVPSITRQFYDAVSEKSKVTPFSAAEFRNLAGRAGRPG
NAQGPEGITLVAIPTQPSTTAPRQIASQTKQLGQLRTHYSGLLSSLREDELEGGKVLSPL
SLLLEAIREKARTLFNVDGEQFLSWLEETAPDEISANAGLVEVDDESRLADSLDELDGVL
LTAIEELSLTGEQADSAAKVEALLRKVWQFTFSKVVNAEEAWLERAFVRRGQGVVGTLYN
DRDERRRLYQYGFTPYVGRRFERIVPKIRSVLEDSQGYGLANQKQRLEVFKRLGLLISND
PGFGFRARASVTDQGLHENWEPLLAWWMSLPGAKAPSAQDLRSWQRFVTENLEFRLGVAI
GAVVAQAWTEGANDPTSVPSLEAWRQTTGLPWFGFWAREMLRWGTLDPFVAFALAQGLAG
TRDEAKVLRESFESWMDLSYMEIEIEDWIDPQYFVEWQRTLHEDTETSSSLQQIKTRLTG
TDGARGSYRVLPLMSRRGVRWLDASGFELARSEMIEEMGEISYRDDFELRISQGKSFVRR
IFRSS