Protein Info for Psyr_5085 in Pseudomonas syringae pv. syringae B728a

Annotation: Twin-arginine translocation pathway signal

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 539 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF04349: MdoG" amino acids 41 to 528 (488 residues), 600.4 bits, see alignment E=1.5e-184

Best Hits

Swiss-Prot: 100% identical to OPGD_PSEU2: Glucans biosynthesis protein D (opgD) from Pseudomonas syringae pv. syringae (strain B728a)

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_5085)

Predicted SEED Role

"Glucans biosynthesis protein D precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZL60 at UniProt or InterPro

Protein Sequence (539 amino acids)

>Psyr_5085 Twin-arginine translocation pathway signal (Pseudomonas syringae pv. syringae B728a)
MNRRNLLKASMALAAYGSVSASGLFAARALAAAADGEIEHFDFAELQAHAKKLASKGYVS
NKQVLPPVLANMTPQQFNAIRYDPNHSLWKDVHGQLDVHFFHVGMGFKTPVRMYSVDPQS
KQAREVHFRHDLFNYENSGIDKNLVKGDLGFAGFKLFKAPEIAINDVVSFLGASYFRAVD
SNKQYGLSARGLAIDSYAKRQEEFPDFTKFWFETPDKNATRFVVYALLDSPSATGAYRFD
IDCQAGQVVMEIDAHVNARTDIQQLGISPMTSMFSCGTHERRMCDTIHPQIHDSDRLSMW
RGNGEWICRPLNNPAKPQFSAFSDTDPKGFGLVQSDHEFSSYQDTVVWYSRRPSLWVEPI
TAWGEGEVSLLELPTTGETMDNIVVFWTPKTPVKAGDSMNYGYKLFWSPLPPVSTPLAQV
HATRSGMGGFLEGWAPGEHYPTTWARRFAVDFNGGGLDRLPEGTGIEPIVTVTHGKVQDF
NILVLPDIKGYRVTFDWVPDSDSVEPVEMRMFIRTGDRTLSETWLYQYFPPAPDKRKYP