Protein Info for Psyr_5011 in Pseudomonas syringae pv. syringae B728a

Annotation: Amino acid adenylation:Thioester reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1148 transmembrane" amino acids 255 to 272 (18 residues), see Phobius details PF00501: AMP-binding" amino acids 196 to 532 (337 residues), 218 bits, see alignment E=4.6e-68 TIGR01733: amino acid adenylation domain" amino acids 215 to 607 (393 residues), 355.7 bits, see alignment E=3.2e-110 PF00550: PP-binding" amino acids 689 to 755 (67 residues), 55.1 bits, see alignment 1.8e-18 TIGR01746: thioester reductase domain" amino acids 792 to 1148 (357 residues), 370 bits, see alignment E=1.6e-114 PF08659: KR" amino acids 793 to 862 (70 residues), 25.4 bits, see alignment 3.1e-09 PF01370: Epimerase" amino acids 793 to 982 (190 residues), 43.1 bits, see alignment E=8.9e-15 PF07993: NAD_binding_4" amino acids 795 to 1031 (237 residues), 196.9 bits, see alignment E=8.7e-62

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_5011)

Predicted SEED Role

"Non-ribosomal peptide synthetase modules and related proteins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLD4 at UniProt or InterPro

Protein Sequence (1148 amino acids)

>Psyr_5011 Amino acid adenylation:Thioester reductase (Pseudomonas syringae pv. syringae B728a)
MKRLEIVLIGHSLTLSELNSELLDHGHGVRHLSDQQALDALTVPDGGVLIEDGSLDLSEE
QLNAFGHCTQLRLRVGFSKALDHGLPRLELLCWHGAAEARRLIVHKWLAVEESGNGRVLR
DAAVAAMVDLATLQISRLSRDEDCLNGMTSVTPARSDRQHGLQAVDQLLFEHRFNQTDQP
HLLKLSETPITERLEQALLTFAERPALSVRNRTLSYRQLHAHSLAIQSLLQPLLAHAKAG
TPAVIGICLHKSAELYAGILAVLGCGAVYLPLDPGQPVQRQQYILENSGAMLLLHDGSHP
LAAAEFPALDIATVPVGDGAPTHVRVATDQDAPCMALYTSGTTGQPKGVLLSQRNLSHFT
AWYAEHVSLSEHSRVLQFSTLSFDSSIIDIFPTWLSGAELVVPDEDQRRDPLQLVSALQQ
GITHAFLPPALLSILPLDQPLGLEHVMTGGDVCEPHVIAQLTRQCHFHNLYGPTEATVLV
TACEFGPSSSNRHLGRPIANSQAWILDEQLQPVAEQTQGELYIIGPGVCLGYVNNPALTA
ERYVWLTKPDGQLMRAYRTGDIAKWTADGIVLSGRRDNQVKIRGFRVEPEEIEHCLRDSG
LYRQVAVVIDRQRRILAFLAQPYLEHDEQALKAHVQRLLPDYMHPAVYTLLPGMPFASNG
KVDRKALLEIPLSFTGQHTRRLPETEQQQALLGLWSELLELPPDDISTDDSFFNLGGHSI
LLSRLLLGVRERFGRSIPINRFIEAPTVLTLASLIDSDGTSAGVLSAQALRDANPDFQLA
TLPVSRLGDVHKVIVTGANGFLGVHIVEALLNRGATEIACLVREAAGQSAQQRFEDALRE
NRLDHLDLSRVQVYPADLTKPRLGLSEAVYERLDLEFGALVHNAANVNHVQDYESLVKDN
VAPVFECLKLCEGRSKKIFNFVSTLSACSAIDAAGNVLEQPAATTPPIYIKNGYNLSKWV
AERILQCARDQGVWVNIYRPGNIAFNSVTGVCQPQKNRLMLMLKGSLQLGQVPAFAINFD
LMPVDFLARFIGFHASRYQPEHAVFNLHNPEPLSWGDYVHAFREAGRQFELVSVEQWQMQ
LRRVDSQNALFGVLGFYLDGFEEDIGDISMIEHRNTLNGIRRMGEQYPQKTPALLRRGCE
YLKEIDFI