Protein Info for Psyr_5009 in Pseudomonas syringae pv. syringae B728a

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 PF11251: DUF3050" amino acids 16 to 244 (229 residues), 300.9 bits, see alignment E=7e-94 PF14518: Haem_oxygenas_2" amino acids 85 to 236 (152 residues), 37.2 bits, see alignment E=2.7e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_5009)

Predicted SEED Role

"PROBABLE REMNANT OF A TRANSPOSASE GENE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLD6 at UniProt or InterPro

Protein Sequence (258 amino acids)

>Psyr_5009 conserved hypothetical protein (Pseudomonas syringae pv. syringae B728a)
MLCEKTLLAHKKVELGRHPIFAEITTLDVLRRFMETHVFAVWDFMSLTKRLQQELTCTQL
PWLPPTDASAARLINEIVLGEESDDRLGAGHYSHFELYLDAMREIGASTVQIERFIELQR
QGMRYTTALQHVDAGQAATAFVTHTLDIALHAPAHSVAAAFLHGRESVIPLMFQTILDDW
GITADQAPTFRYYLERHIEVDAEDHGPAAEQLLARLVAGDTQREREVYQTAIAAVESRIR
LWDTLRLSMRTPRMQASA