Protein Info for Psyr_5004 in Pseudomonas syringae pv. syringae B728a

Annotation: chemotaxis sensory transducer

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 672 PF08495: FIST" amino acids 44 to 250 (207 residues), 90.9 bits, see alignment E=1.5e-29 PF10442: FIST_C" amino acids 266 to 389 (124 residues), 57.8 bits, see alignment E=2e-19 PF00015: MCPsignal" amino acids 537 to 638 (102 residues), 108.3 bits, see alignment E=5.9e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_5004)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLE1 at UniProt or InterPro

Protein Sequence (672 amino acids)

>Psyr_5004 chemotaxis sensory transducer (Pseudomonas syringae pv. syringae B728a)
MSLLSRFRAGTSRTEGAISVITSARELNAKLSALSFDPVYLTGFVSPHVDFDQVAKSVAA
RFPNAKISLCTTSGELCSGNDSLYCAADNQWDRIVLALFDSSVIKSAEVLHIPLHSEDIR
GAGKRLSMRERIARLTDSIKRTQINTPIDHRDTLAYVTFDGLSASESFFMEALYESGRFP
CLFVGGSAGGKGDFKKTLIHDGKRSYENHAQVVFLKSAKNVRFGVFKSQNFEPTPLSLSV
LTASLEERYISQVVNARGEITTMVAALCEALKCERHELEGKLAQYSFAIRVGEELFVRSI
ARIDYESERVHLFCDVAPGEELVMVKRTSMIDTTRKDFARFLQGKSGKPLLGLLSDCILR
RLNNGSELGRMNDVFGATPVVGFSTFGEILGLNLNQTLTAVFFFKVPEGQPFRDDYIDNF
IAYYGEFKAFFLRRQIKKLAGLSHVVVKQIDQFKQRNFVQTIDPSGLDEQIRPVFGGLSD
LGDVLVKAHHDQEEIAAQLRHYSGELHVSMDELSQTITQQETVIDKAGSTVKSLVSQADE
VVLGSRELAKSSLRIQSVVQTIQQIAGQTNLLALNAAIEAARAGEMGRGFAVVADEVRQL
AQKTSQNANDIGTDIERLAEEIRKVAQHIEEQSLEVGTLTGLLSELEGSSDMTAGTSQRT
RQLADTLRGLTQ