Protein Info for Psyr_4998 in Pseudomonas syringae pv. syringae B728a

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 transmembrane" amino acids 12 to 28 (17 residues), see Phobius details amino acids 34 to 54 (21 residues), see Phobius details amino acids 62 to 84 (23 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 144 to 162 (19 residues), see Phobius details amino acids 168 to 185 (18 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4998)

Predicted SEED Role

"Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLE7 at UniProt or InterPro

Protein Sequence (236 amino acids)

>Psyr_4998 hypothetical protein (Pseudomonas syringae pv. syringae B728a)
MIEPQPNAIKKGLYGSFLLIALFGTMSTFKSDFFWLVCLGLFTLLMRAIYLIYLSESFTA
IAVHSFTGLFSSFLLMNTSVIYLIAKSEYGASTTDALSWAMIPALLMLVSFLFIYFTKSR
SRQLSFETRDNKVYMVHGYVSTRNGNLLSGGVIVAGIAAMIVWPIELIIMVSIWIALINL
YLLYWNRDAIRILKKILALEKKHNRSYTFEYIEQLREARSRWWLGRFLKWVISFSK