Protein Info for Psyr_4986 in Pseudomonas syringae pv. syringae B728a

Annotation: YD repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1409 transmembrane" amino acids 16 to 38 (23 residues), see Phobius details amino acids 44 to 64 (21 residues), see Phobius details PF05488: PAAR_motif" amino acids 73 to 138 (66 residues), 61 bits, see alignment 2.1e-20 PF20148: DUF6531" amino acids 232 to 305 (74 residues), 73 bits, see alignment 4e-24 TIGR01643: YD repeat (two copies)" amino acids 527 to 566 (40 residues), 27.3 bits, see alignment (E = 3.6e-10) amino acids 576 to 609 (34 residues), 20.7 bits, see alignment (E = 4.4e-08) amino acids 632 to 673 (42 residues), 16.3 bits, see alignment (E = 1.1e-06) amino acids 676 to 714 (39 residues), 24.5 bits, see alignment (E = 2.9e-09) amino acids 737 to 777 (41 residues), 22.4 bits, see alignment (E = 1.3e-08) amino acids 859 to 894 (36 residues), 24 bits, see alignment (E = 4e-09) PF05593: RHS_repeat" amino acids 527 to 559 (33 residues), 22 bits, see alignment (E = 3.5e-08) amino acids 552 to 585 (34 residues), 23 bits, see alignment (E = 1.7e-08) amino acids 859 to 894 (36 residues), 30.8 bits, see alignment (E = 5.9e-11) PF03527: RHS" amino acids 1173 to 1207 (35 residues), 66.4 bits, see alignment (E = 3.2e-22) TIGR03696: RHS repeat-associated core domain" amino acids 1200 to 1276 (77 residues), 92.2 bits, see alignment 2.3e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4986)

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLF9 at UniProt or InterPro

Protein Sequence (1409 amino acids)

>Psyr_4986 YD repeat protein (Pseudomonas syringae pv. syringae B728a)
MFEAARFGDEISHTGALGGFLIGAVLGIALIATVAIATFTCGFGVALLAGLAAGVGGSLL
TAAGEAIGSMFSSPSGTIITASPNVYINNRKAAHVEKSIGACDKHPGPVKIAEGSTNVFI
NSVAAARKGDKLTCGATISGGSDNVFIGGGRYRYLPVDDEIPGWLRTTVDVLMAVAGAAG
GIAQLIKAGTQAGMKAVLPCALKFTAGFVAGEVGSRYVVEPVMRSAIGGLSGNPVDTTTG
RKLIPDEIDFSLPGLMPIEWSRFYASNLNVDSVLGKGWVLPWEQSLRKRGSFLYLTDNQG
RTVPFVDIAPGQRIYNPHEQVYLVCTQGGHYLLQTLDNIFFYFGEVPDDNKPVPLDRIEN
ALGHFLHFTRTEQGTLTDISATGGIRVHLHYDEVTTRLTSVKRIVDNEAVETLVQYHYDS
NGQLAEVFNRNGDSVRRFSYTDGVMTRHSNALGLTCEYRWEIIDGQPRVVEHQTSDGEHF
HFRYDREARTTWVTDVLGRELEIHYNKDHRVTSSRDYSGDHYVIEIDDTGNMTGLTLPDG
NQLAFEYDEFARLLKETDPLGRSIRYQYHHLTTLITQVDYPDGSTWKANYDAKGNLVAEI
DALGHKTEYLNGEDGLPHTIVDPTLKSKYLWWNNLAQVQRFQDCSGKSTYYRYDERHHLV
AVTDALNNTTTLERKPDGEVLRINHPDGTHETFTYNELGQVLTHTDGKGQTTQLLRNGRG
LPKWRQDAKGQTITYEYDKAIRLVALTNENDATYRFAYDNADRLIEEKRIDNLTRRFSYN
LGGHLTQVEEIGYGDKGEQPRRSTHLERDPIGRLLAKLNDDARQDYAYDDGDRLLSIERK
PTDTGRKLGITAEKIDFAYDLLGRLVKETTPQGALAYEYDPLSNLTTLTLPTGQHLNHLY
YGSGHLHQMNLDGQLISDMERDDLHREIYRTQGKLTSCFGYDSMGRKAWQYATTLPAEKL
SQIQNPLIKPERYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLARNTG
RVVDGEEFRYDAAANRLNFNTSRFDHVKDNRLRQWANHEYKYDAWGNLIEKVVGIVRWQT
FTYDCENRLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKGHTEHKRFLWQGLRMLRE
ENPGQSSLYIYEPGSYAPLARVDEKEGEVENKVYYFHTDQIGTPLEMTDAEGQIVWQAKY
RAWGAVEKLVVNEVEQNLRFQGQYFDVETGLHYNTFRYYDPEIGRFITQDPIGLLGGYNL
YQYAPSAIGWIDPQGLATLFELGTYGGLNGSTHVGDGLQAHELLRHEYLVQQNLAEKSTR
LPGNPSIALDLDHHTRGPMKDTRGIGGTHWHEAQIRESQGLGRNEFASSVKRELDITSGA
LRKSGVPKSRVKELRRMAKKFHSSLNGCG