Protein Info for Psyr_4953 in Pseudomonas syringae pv. syringae B728a

Annotation: Uncharacterized conserved protein UCP028301

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 TIGR03358: type VI secretion protein, VC_A0107 family" amino acids 8 to 164 (157 residues), 206.7 bits, see alignment E=8.8e-66 PF05591: T6SS_VipA" amino acids 12 to 164 (153 residues), 207.9 bits, see alignment E=3.8e-66

Best Hits

KEGG orthology group: K11901, type VI secretion system protein ImpB (inferred from 99% identity to psp:PSPPH_0134)

Predicted SEED Role

"Uncharacterized protein ImpB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLJ2 at UniProt or InterPro

Protein Sequence (177 amino acids)

>Psyr_4953 Uncharacterized conserved protein UCP028301 (Pseudomonas syringae pv. syringae B728a)
MAKKESTQHKLDRVRAPRVHITYDVDIGDAQEKKELPFVVGVLGDFSGNPLEPLPKLKDR
KFIFIDRDNFNGVLKGIKPRLAYRVDNTLAKDGTQLGVELNFNALEDFEPQNVVRQVEPL
RKLLEVRNKLADLRNKMGGNDKLEELLMDVLQNTEKLKTLGKEFGREAAVPATDSKE