Protein Info for Psyr_4888 in Pseudomonas syringae pv. syringae B728a

Annotation: Protein of unknown function DUF610

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF04748: Polysacc_deac_2" amino acids 35 to 240 (206 residues), 256.6 bits, see alignment E=6.5e-81

Best Hits

KEGG orthology group: K09798, hypothetical protein (inferred from 100% identity to psb:Psyr_4888)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLQ7 at UniProt or InterPro

Protein Sequence (260 amino acids)

>Psyr_4888 Protein of unknown function DUF610 (Pseudomonas syringae pv. syringae B728a)
MRFLTLLLLTLSITGAAHAAPAENSGKPSKAYLSLIIDDLGQNPQRDSRTLALPGPVTLA
IMPDTPHATEFARQAHRAGKTVMLHMPMDPATGPYAWHPELPLPELESRLNAALLKVPYA
AGINNHMGSRMTAEPVAMTWLMAELQRRHLFFVDSRTSAKTVAAAEAQRIGLASVSRDVF
LDDERTAEAITRQLQTAIKIARKYGSAVVIGHPYPVTLDVLERELPNLKAQGVEWIDLRS
MIGERGNQASAAHGKNGIYR