Protein Info for Psyr_4884 in Pseudomonas syringae pv. syringae B728a

Annotation: Rhodanese-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details PF00581: Rhodanese" amino acids 40 to 129 (90 residues), 56.2 bits, see alignment E=2.1e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4884)

Predicted SEED Role

"FIG136845: Rhodanese-related sulfurtransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLR1 at UniProt or InterPro

Protein Sequence (137 amino acids)

>Psyr_4884 Rhodanese-like protein (Pseudomonas syringae pv. syringae B728a)
MVAHLLEFATNHYLITGAFVILLGLLIAYEMSKGGASLSTRELTALVNSDQGVVIDVRSK
KDYTAGHIVGSLNFPQDKVLTRTAELEKYKDKTLIIVDAMGQHAGSTARELLKSGFKAAK
LSGGISSWRGDNLPLVK