Protein Info for Psyr_4815 in Pseudomonas syringae pv. syringae B728a

Annotation: Small GTP-binding protein domain:GTP-binding protein TypA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 606 PF00009: GTP_EFTU" amino acids 4 to 195 (192 residues), 194 bits, see alignment E=4.7e-61 TIGR01394: GTP-binding protein TypA/BipA" amino acids 5 to 599 (595 residues), 933.2 bits, see alignment E=5.4e-285 TIGR00231: small GTP-binding protein domain" amino acids 5 to 139 (135 residues), 81.3 bits, see alignment E=7e-27 PF01926: MMR_HSR1" amino acids 8 to 129 (122 residues), 26.7 bits, see alignment E=1.3e-09 PF03144: GTP_EFTU_D2" amino acids 219 to 289 (71 residues), 41.4 bits, see alignment E=3.9e-14 PF00679: EFG_C" amino acids 396 to 477 (82 residues), 80.2 bits, see alignment E=2.4e-26 PF21018: BipA_C" amino acids 485 to 592 (108 residues), 152.7 bits, see alignment E=7.2e-49

Best Hits

Swiss-Prot: 72% identical to TYPA_ECO57: GTP-binding protein TypA/BipA (typA) from Escherichia coli O157:H7

KEGG orthology group: K06207, GTP-binding protein (inferred from 100% identity to psb:Psyr_4815)

Predicted SEED Role

"GTP-binding protein TypA/BipA" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLY0 at UniProt or InterPro

Protein Sequence (606 amino acids)

>Psyr_4815 Small GTP-binding protein domain:GTP-binding protein TypA (Pseudomonas syringae pv. syringae B728a)
MIENLRNIAIIAHVDHGKTTLVDKLLRQSGTLERGELNDERVMDSNDQEKERGITILAKN
TAINWNGYHINIVDTPGHADFGGEVERVMSMVDSVLLLVDAQDGPMPQTRFVTKKAFEAG
LRPIVVINKVDRPGARPDWVLDQIFDLFDNLGATEEQLDFKVVYASALNGIAGLEHTAMA
EDMTPLYQAIVDHVPAPKVDRDGPFQMQISALDYNSFLGVIGVGRIARGRVKPNTPVVAI
DVNGKKRNGRILKLMGHHGLHRIDVEEAAAGDIVCISGFDQLFISDTLCDPLNVEAMKPL
TVDEPTVSMTFQVNDSPFCGKEGKFVTSRNIKERLDKELLYNVALRVEEGDTADKFKVSG
RGELHLSVLIETMRREGFEMGVGRPEVIIRMVDGVKHEPYENVTIDLPEEAQGAIMEQMG
NRKGDLTNMVPDGKGRVRLEYNIPARGLIGFRNEFLTLTSGAGILTSIFDRYDVMKSGDM
SGRQNGVLVSVATGKALTYSLETLQARGKLFLGHGEDVYEGQIVGINSRDNDLGVNPTKG
KKLDNMRASGKDETIALVPPIRFTLEQALEFVQEDELCEVTPKSIRLRKKILGESERTRA
AKKSGN