Protein Info for Psyr_4778 in Pseudomonas syringae pv. syringae B728a
Annotation: hypothetical protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4778)Predicted SEED Role
"FIG00953540: hypothetical protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q4ZM17 at UniProt or InterPro
Protein Sequence (2378 amino acids)
>Psyr_4778 hypothetical protein (Pseudomonas syringae pv. syringae B728a) MKKYQRTVLSVAFITGLLLAWLVSAAPDQGPSSLPAPAVSIAQVSTVSREVNAGTFEQPR QAGEPAFEGAVFFVHTGQFIAFFIAAFDSQPEQLDPALPDAPHSTDFWTYAGQHSGLGPD LKPFDEPTREGALHLAMIEGKNALLSSKINGMPGPQTPYPTTAQSNDFWDFIGFFDKPGT PEAMKTDQDLVWPGVFVYFEQTKAVYLAQHTGRPSVDAWPAPGTERGAGYWTFAGTLSGI QTSLPKPWTDLSTSKGSYYRNPLTPLRSDYYASTFIGFAPLLNAQFPGGAQSNQYWDYRG VHEGSYTDQKAFGENTALEKLHRAKLQGKWVSFAAHFSGAVEQPYPTSPTNTTYWGVRHI TQNAGTWQDPRTDLDTETWVGAIHSVQQGQGKALYRALKSWTAPPTGWDYSQTDEFELLG TSLHAGTVADPKTQQEFTWPGAVHETLIDDSPVYFVSLAEGFPSKHDWPLPTTPESNEHW SYIPEIPPLGTFEAPRRFDDYSQAGSVYVDGTVPGARTFYVSSYEGYPANDLDSFSTVGI VDPYWVYAGGHAGTWSDFKPFDDITRIGALHEASIKGQRVVLRSLFDGMPSAATPYPSDL ASNTHWEFVTVFKHAGTADDLKGRDDATWPGALHLDDDQHIIFAARQQAQPVAGGWVYPA GETSDEQWSYVTSLNGGTAETPRERNDINTPGAIFADQLGLTRQKLFRSRFAGFAQDVGA VYPSGEESNTFYEYAGEHAGTFSDPKPFTDPTWPDAIHVATINGQRVLLKSKMTGKPTSQ TPYPQDPTSTDFWEFMFTSDQAGTYADPKSMSGETWIGAVHEYSSSGRRQLYIAQQSGNP IADNWPLPTSGDTQYWKVLGLVRHKGTFADPKDFDEMTSQGLIHATIVEGQRVYYRALAR GVPQANDWSYPAPGTHNEHWEYLGTNLPVGTWADPKGDSGFTTPGSIHAMQARDRTLYLL SKVDGLLAEHDWPIPLVGENDYWTVVGESRHSGEIIDPKDQQEVTWTGAIHMRQVDNTRR YYRSKITGNLAVIGIDHPLPLEATDNAWWEFAGQSSHQGTLTDPVQTGEMIRPGDTVKVI HTADEYYQARFAGVFNTGHPLPDSQQSNDNWFYVGKSAFAGTLQSPKDAYEITWPGAIHR FEVDGKAYFARALIDGAPGQEGWHYPAPPDSNEQWSYLDMGIHAGSWLDPKPQSDATWPG ALHVVKIPTGIGESFTRWFYRSKIWGHVADDEEGYANENNFDRVGFSIYQGTLNSPKLFD QPTWVGAIHLDRGTQFLFEARKSGEMGIDVGERPMTPTDNESWHFLGISKHFGTQNDPKE WDEYTWPGRLHRYEHDGKTLYFHAQMTGTPSTNNWYYPTDESSTEQWAYYGTTSHAGTFA DPHIPDEVTWRGAIHRVEKDGIRFYFKARSAGIPEQQNWTYPTDATNNEHFIYVATERHA GTLSDPKDEKEPVVPGDYVKTPHEGIDLYFIAKNSGVPSLNDWPFPFDMRDTENWVFYGI SRNAGTLDAPKEWDEVSWRGAVHVHNVSGMRLLFSVNSDKEGIPEQDKWTLPPNAPLDAD EEKKPPALVEKSPAWKFLQVTHLNGTREQPKSVADWTQNGLVHQTTIDYQRMLFRSKFTG KNDYPKGQPAKDDPVAPKSSTWWEFFSKGRGTLQVPNTWNDYAYPDDIYSYDYQGERLLF RAEKEGRPSEKGWYFPTSEYSTSDWTYLYKNEGNYADPKTWNEFTRVGEIHRSDHDGQTW FFKALQEGSPARHNWYYPAGAADNGFWTYAGKHAGTWQDPKEWNEPTYPGAIHSLNNITF YRSKFSGNAATHYWYYPTAETENAYWIKVSKDAYAAPGINDFTRPFDQYTWVTAHNAYLD AITPQLERGIRGFMLDIHMDVGDYNGQKRVRVCHLPAIGACWADAPLLSDVLREFVAYMQ KDRNAVISLLFESTLSSDELRPVLEQVPELADYSHVSNGYSWPTLREMIDSNKRLVMLSN GEVAKTYTLAGKQAEVLWAPDTEVENTYNLGITSLVHDWQCKSRYGYMDLSLRTRDGGLP RLFVLNQFHSWGSTTLHAGDVDNNLTWLQRRVENHCGEATGWRKPNYLGIDFNQVGDALP YAATLSQGGLYFYERNNADRGGDASCVLPVNQSGGSSGVQYDLKLASRGCENDELRSMEL EGVRAGTRIELYDNPNGDRQDDFTIIDVKQSVPMGKRVRIDSFEGTTDTFYYRKLASRNN GLDGKVSRIRVLNKPDDNDISDASIVFYEGNGATQNIVCTVPFNVDRQFKMGSGNNNYGC DNDEIRSAKILKAGKGSMFSVTGRPDGGFGQGRTGVTFKRAILLPITISSFDRSYENADV KVEVSNGGDLDGSISYAYFRPLSEQKGKPPIKEGSTRP