Protein Info for Psyr_4633 in Pseudomonas syringae pv. syringae B728a

Annotation: SpoVR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 520 PF04293: SpoVR" amino acids 16 to 447 (432 residues), 619 bits, see alignment E=1.8e-190

Best Hits

Swiss-Prot: 67% identical to YCGB_ECOLI: Uncharacterized protein YcgB (ycgB) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4633)

Predicted SEED Role

"FIG004684: SpoVR-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZMF9 at UniProt or InterPro

Protein Sequence (520 amino acids)

>Psyr_4633 SpoVR (Pseudomonas syringae pv. syringae B728a)
MTAREQKRQPLSTGSEWTFELIRAYDREIGRIAERYALDTYPNQIEVITAEQMMDAYASV
GMPLGYHHWSYGKHFLSTEKSYSRGQMGLAYEIVINSDPCIAYLMEENTICMQALVVAHA
CYGHNSFFKGNYLFRTWTDASSIIDYLVFAKQYIMQCEERHGIDAVEDLLDSCHALMNYG
VDRYKRPYPISAEEERRRQKDREEHLQRQINDLWRTIPKSADKSSKEDNARFPAEPQENI
LYFIEKHAPLLEPWQREVVRIVRKIAQYFYPQRQTQVMNEGWATFWHYTLMNDLYDEGLV
TDGFMMEFLQSHTSVIFQPGFDSPYYSGINPYALGFAMYQDIRRMCENPTDEDRQWFPEI
AGSDWLTAIKFAMTSFKDESFILQYLSPKVIRDLKLFSIMDDDQQEDLLVPAIHDENGYR
TIREILAAQYNLGNREPNVQIYSIDRRGDRSLTLRHQQHNRKPLGDSTDEVLKHLHRLWG
FDIHLETLQGDQVVKTHHVPPKGEHADSEYPRLDMAVVHL