Protein Info for Psyr_4587 in Pseudomonas syringae pv. syringae B728a

Annotation: Baseplate J-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 PF04865: Baseplate_J" amino acids 85 to 156 (72 residues), 43.2 bits, see alignment E=7.1e-15 PF26078: Baseplate_J_M" amino acids 188 to 261 (74 residues), 89.9 bits, see alignment E=1.7e-29 PF26079: Baseplate_J_C" amino acids 270 to 345 (76 residues), 45.5 bits, see alignment E=1e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4587)

Predicted SEED Role

"Phage FluMu protein gp47"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZMK5 at UniProt or InterPro

Protein Sequence (346 amino acids)

>Psyr_4587 Baseplate J-like protein (Pseudomonas syringae pv. syringae B728a)
MPFETPTLPALINRTQVDLADEALRQSDARVLSRAHSGAAYGLYGYQDWIADQILPDTAD
EETLERQAILRLRQPRKVAQAATGTVRFSAAAGAVLDADTVLQFSDGRFYRVTKGVTTVA
GNNTTTVEAVDAGVLGNADAGLVMTAVQPVEGIDSTFTVIADGLSGGISQESIESLRARV
VRSYRVIPHGGNQDDYVTWALEVPGVTRAWCVRRFMGPGTVAVFFMRDDQADPIPDAEQL
AAVAAYIEPLRPVTADVYVLAPVQKPVVYTIRLTPDTSAVRAAVEAQLLDLHNREGGLGE
TLLLTHIAEAISRATGETDHVLVSPVANVTAAANQLLTFGGIQWSS